{ "resourceType" : "Specimen", "id" : "MusterprobeGewebe", "meta" : { "profile" : ["https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Specimen"] }, "language" : "de", "text" : { "status" : "extensions", "div" : "

German

Generated Narrative: Specimen MusterprobeGewebe

Profile: MII PR Biobank Specimen Bioprobe

MII EX Biobank Verwaltende Organisation: Organization Mustersammlung

MII EX Biobank Diagnose: Diagnose/mii-exa-test-data-patient-1-diagnose-1

MII EX Biobank Ebene: MII CS Biobank Probenebene: ALIQUOTGRUPPE (Aliquotgruppe)

identifier: https://biobank.uk-musterstadt.de/fhir/sid/proben/6789

status: Available

type: Specimen from lung obtained by needle biopsy (specimen)

subject: Patient/mii-exa-test-data-patient-1

receivedTime: 2018-06-08 15:43:00+0100

request: ServiceRequest Needle biopsy of lung (procedure)

Collections

-ExtensionCollected[x]MethodBodySiteFastingStatus[x]
*2018-06-08 15:34:00+0100Needle biopsy of lung (procedure)Structure of apex of left lung (body structure)No display for Duration (value: 4; system: http://unitsofmeasure.org; code: h)

processing

MII EX Biobank Temperaturbedingungen: 15-25 °C

Sample storage temperature: Room temperature

procedure: Storage of specimen (procedure)

time: 2018-06-08 15:34:00+0100 --> 2018-06-08 15:46:00+0100

processing

MII EX Biobank Temperaturbedingungen: -85--60 °C

Sample storage temperature: between -60 and -85 degrees Celsius

procedure: Storage of specimen (procedure)

time: 2018-06-08 15:49:00+0100 --> (ongoing)

Containers

-TypeSpecimenQuantity
*Tube, device (physical object)5 g (Details: UCUM codeg = 'g')
" }, "extension" : [{ "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/VerwaltendeOrganisation", "valueReference" : { "reference" : "Organization/Mustersammlung" } }, { "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Diagnose", "valueReference" : { "reference" : "Diagnose/mii-exa-test-data-patient-1-diagnose-1" } }, { "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene", "valueCoding" : { "system" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/CodeSystem/mii-cs-biobank-probenebene", "code" : "ALIQUOTGRUPPE", "display" : "Aliquotgruppe" } }], "identifier" : [{ "system" : "https://biobank.uk-musterstadt.de/fhir/sid/proben", "value" : "6789" }], "status" : "available", "type" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "16214371000119104", "display" : "Specimen from lung obtained by needle biopsy (specimen)" }, { "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs", "code" : "TissueFreshFrozen", "display" : "Tissue (fresh frozen)" }] }, "subject" : { "reference" : "Patient/mii-exa-test-data-patient-1" }, "receivedTime" : "2018-06-08T15:43:00+01:00", "request" : [{ "reference" : "ServiceRequest/GewebeBiopsie" }], "collection" : { "extension" : [{ "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung", "valueDateTime" : "2018-06-08T15:32:00+01:00" }], "collectedDateTime" : "2018-06-08T15:34:00+01:00", "method" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "274319000", "display" : "Needle biopsy of lung (procedure)" }] }, "bodySite" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "14559000", "display" : "Structure of apex of left lung (body structure)" }] }, "fastingStatusDuration" : { "value" : 4, "system" : "http://unitsofmeasure.org", "code" : "h" } }, "processing" : [{ "extension" : [{ "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen", "valueRange" : { "low" : { "value" : 15, "unit" : "°C", "system" : "http://unitsofmeasure.org", "code" : "Cel" }, "high" : { "value" : 25, "unit" : "°C", "system" : "http://unitsofmeasure.org", "code" : "Cel" } } }, { "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-storage-temperature-extension", "valueCodeableConcept" : { "coding" : [{ "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs", "code" : "RT", "display" : "Room temperature" }] } }], "procedure" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "1186936003", "display" : "Storage of specimen (procedure)" }] }, "timePeriod" : { "start" : "2018-06-08T15:34:00+01:00", "end" : "2018-06-08T15:46:00+01:00" } }, { "extension" : [{ "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen", "valueRange" : { "low" : { "value" : -85, "unit" : "°C", "system" : "http://unitsofmeasure.org", "code" : "Cel" }, "high" : { "value" : -60, "unit" : "°C", "system" : "http://unitsofmeasure.org", "code" : "Cel" } } }, { "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-storage-temperature-extension", "valueCodeableConcept" : { "coding" : [{ "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs", "code" : "-60to-85", "display" : "between -60 and -85 degrees Celsius" }] } }], "procedure" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "1186936003", "display" : "Storage of specimen (procedure)" }, { "system" : "http://snomed.info/sct", "code" : "27872000", "display" : "Specimen freezing (procedure)" }] }, "timePeriod" : { "start" : "2018-06-08T15:49:00+01:00" } }], "container" : [{ "type" : { "coding" : [{ "system" : "http://snomed.info/sct", "code" : "83059008", "display" : "Tube, device (physical object)" }] }, "specimenQuantity" : { "value" : 5, "unit" : "g", "system" : "http://unitsofmeasure.org", "code" : "g" } }] }