MII IG Kerndatensatz-Modul Biobank
2027.0.0-ballot -
Germany
MII IG Kerndatensatz-Modul Biobank - Downloaded Version 2027.0.0-ballot See the Directory of published versions
<Specimen xmlns="http://hl7.org/fhir">
<id value="MusterprobeGewebe"/>
<meta>
<profile
value="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Specimen"/>
</meta>
<language value="de"/>
<text>
<status value="extensions"/>
<div xml:lang="de" lang="de"><hr/><p><b>German</b></p><hr/><p class="res-header-id"><b>Generated Narrative: Specimen MusterprobeGewebe</b></p><a name="de-MusterprobeGewebe"> </a><a name="de-hcMusterprobeGewebe"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-mii-pr-biobank-specimen.html">MII PR Biobank Specimen Bioprobe</a></p></div><p><b>MII EX Biobank Verwaltende Organisation</b>: <a href="Organization-Mustersammlung.html">Organization Mustersammlung</a></p><p><b>MII EX Biobank Diagnose</b>: <a href="https://simplifier.net/resolve?scope=de.basisprofil.r4@1.6.0&canonical=http://fhir.org/packages/de.basisprofil.r4/Diagnose/mii-exa-test-data-patient-1-diagnose-1">Diagnose/mii-exa-test-data-patient-1-diagnose-1</a></p><p><b>MII EX Biobank Ebene</b>: <a href="CodeSystem-mii-cs-biobank-probenebene.html#mii-cs-biobank-probenebene-ALIQUOTGRUPPE">MII CS Biobank Probenebene: ALIQUOTGRUPPE</a> (Aliquotgruppe)</p><p><b>identifier</b>: <code>https://biobank.uk-musterstadt.de/fhir/sid/proben</code>/6789</p><p><b>status</b>: Available</p><p><b>type</b>: <span title="Codes:{http://snomed.info/sct 16214371000119104}, {https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs TissueFreshFrozen}">Specimen from lung obtained by needle biopsy (specimen)</span></p><p><b>subject</b>: <a href="https://simplifier.net/resolve?scope=de.basisprofil.r4@1.6.0&canonical=http://fhir.org/packages/de.basisprofil.r4/Patient/mii-exa-test-data-patient-1">Patient/mii-exa-test-data-patient-1</a></p><p><b>receivedTime</b>: 2018-06-08 15:43:00+0100</p><p><b>request</b>: <a href="ServiceRequest-GewebeBiopsie.html">ServiceRequest Needle biopsy of lung (procedure)</a></p><h3>Collections</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Extension</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td><td><b>BodySite</b></td><td><b>FastingStatus[x]</b></td></tr><tr><td style="display: none">*</td><td/><td>2018-06-08 15:34:00+0100</td><td><span title="Codes:{http://snomed.info/sct 274319000}">Needle biopsy of lung (procedure)</span></td><td><span title="Codes:{http://snomed.info/sct 14559000}">Structure of apex of left lung (body structure)</span></td><td>No display for Duration (value: 4; system: http://unitsofmeasure.org; code: h)</td></tr></table><blockquote><p><b>processing</b></p><p><b>MII EX Biobank Temperaturbedingungen</b>: 15-25 °C</p><p><b>Sample storage temperature</b>: <span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs RT}">Room temperature</span></p><p><b>procedure</b>: <span title="Codes:{http://snomed.info/sct 1186936003}">Storage of specimen (procedure)</span></p><p><b>time</b>: 2018-06-08 15:34:00+0100 --> 2018-06-08 15:46:00+0100</p></blockquote><blockquote><p><b>processing</b></p><p><b>MII EX Biobank Temperaturbedingungen</b>: -85--60 °C</p><p><b>Sample storage temperature</b>: <span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs -60to-85}">between -60 and -85 degrees Celsius</span></p><p><b>procedure</b>: <span title="Codes:{http://snomed.info/sct 1186936003}, {http://snomed.info/sct 27872000}">Storage of specimen (procedure)</span></p><p><b>time</b>: 2018-06-08 15:49:00+0100 --> (ongoing)</p></blockquote><h3>Containers</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Type</b></td><td><b>SpecimenQuantity</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://snomed.info/sct 83059008}">Tube, device (physical object)</span></td><td>5 g<span style="background: LightGoldenRodYellow"> (Details: UCUM codeg = 'g')</span></td></tr></table></div>
</text>
<extension
url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/VerwaltendeOrganisation">
<valueReference>🔗
<reference value="Organization/Mustersammlung"/>
</valueReference>
</extension>
<extension
url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Diagnose">
<valueReference>
<reference value="Diagnose/mii-exa-test-data-patient-1-diagnose-1"/>
</valueReference>
</extension>
<extension
url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene">
<valueCoding>
<system
value="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/CodeSystem/mii-cs-biobank-probenebene"/>
<code value="ALIQUOTGRUPPE"/>
<display value="Aliquotgruppe"/>
</valueCoding>
</extension>
<identifier>
<system value="https://biobank.uk-musterstadt.de/fhir/sid/proben"/>
<value value="6789"/>
</identifier>
<status value="available"/>
<type>
<coding>
<system value="http://snomed.info/sct"/>
<code value="16214371000119104"/>
<display
value="Specimen from lung obtained by needle biopsy (specimen)"/>
</coding>
<coding>
<system
value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs"/>
<code value="TissueFreshFrozen"/>
<display value="Tissue (fresh frozen)"/>
</coding>
</type>
<subject>
<reference value="Patient/mii-exa-test-data-patient-1"/>
</subject>
<receivedTime value="2018-06-08T15:43:00+01:00"/>
<request>🔗
<reference value="ServiceRequest/GewebeBiopsie"/>
</request>
<collection>
<extension
url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung">
<valueDateTime value="2018-06-08T15:32:00+01:00"/>
</extension>
<collectedDateTime value="2018-06-08T15:34:00+01:00"/>
<method>
<coding>
<system value="http://snomed.info/sct"/>
<code value="274319000"/>
<display value="Needle biopsy of lung (procedure)"/>
</coding>
</method>
<bodySite>
<coding>
<system value="http://snomed.info/sct"/>
<code value="14559000"/>
<display value="Structure of apex of left lung (body structure)"/>
</coding>
</bodySite>
<fastingStatusDuration>
<value value="4"/>
<system value="http://unitsofmeasure.org"/>
<code value="h"/>
</fastingStatusDuration>
</collection>
<processing>
<extension
url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen">
<valueRange>
<low>
<value value="15"/>
<unit value="°C"/>
<system value="http://unitsofmeasure.org"/>
<code value="Cel"/>
</low>
<high>
<value value="25"/>
<unit value="°C"/>
<system value="http://unitsofmeasure.org"/>
<code value="Cel"/>
</high>
</valueRange>
</extension>
<extension
url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-storage-temperature-extension">
<valueCodeableConcept>
<coding>
<system
value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs"/>
<code value="RT"/>
<display value="Room temperature"/>
</coding>
</valueCodeableConcept>
</extension>
<procedure>
<coding>
<system value="http://snomed.info/sct"/>
<code value="1186936003"/>
<display value="Storage of specimen (procedure)"/>
</coding>
</procedure>
<timePeriod>
<start value="2018-06-08T15:34:00+01:00"/>
<end value="2018-06-08T15:46:00+01:00"/>
</timePeriod>
</processing>
<processing>
<extension
url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen">
<valueRange>
<low>
<value value="-85"/>
<unit value="°C"/>
<system value="http://unitsofmeasure.org"/>
<code value="Cel"/>
</low>
<high>
<value value="-60"/>
<unit value="°C"/>
<system value="http://unitsofmeasure.org"/>
<code value="Cel"/>
</high>
</valueRange>
</extension>
<extension
url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-storage-temperature-extension">
<valueCodeableConcept>
<coding>
<system
value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs"/>
<code value="-60to-85"/>
<display value="between -60 and -85 degrees Celsius"/>
</coding>
</valueCodeableConcept>
</extension>
<procedure>
<coding>
<system value="http://snomed.info/sct"/>
<code value="1186936003"/>
<display value="Storage of specimen (procedure)"/>
</coding>
<coding>
<system value="http://snomed.info/sct"/>
<code value="27872000"/>
<display value="Specimen freezing (procedure)"/>
</coding>
</procedure>
<timePeriod>
<start value="2018-06-08T15:49:00+01:00"/>
</timePeriod>
</processing>
<container>
<type>
<coding>
<system value="http://snomed.info/sct"/>
<code value="83059008"/>
<display value="Tube, device (physical object)"/>
</coding>
</type>
<specimenQuantity>
<value value="5"/>
<unit value="g"/>
<system value="http://unitsofmeasure.org"/>
<code value="g"/>
</specimenQuantity>
</container>
</Specimen>