MII IG Kerndatensatz-Modul Biobank
2027.0.0-ballot - Germany

This page is part of the MII IG Kerndatensatz-Modul Biobank (v2027.0.0-ballot: 2027 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. No current official version has been published yet. For a full list of available versions, see the Directory of published versions

: Musterprobe Gewebe

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<Specimen xmlns="http://hl7.org/fhir">
  <id value="MusterprobeGewebe"/>
  <meta>
    <profile
             value="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Specimen"/>
  </meta>
  <language value="en"/>
  <text>
    <status value="extensions"/>
    <div xml:lang="en" lang="en"><hr/><p><b>English</b></p><hr/><p class="res-header-id"><b>Generated Narrative: Specimen MusterprobeGewebe</b></p><a name="MusterprobeGewebe"> </a><a name="hcMusterprobeGewebe"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-mii-pr-biobank-specimen.html">MII PR Biobank Specimen Bioprobe</a></p></div><p><b>MII EX Biobank Verwaltende Organisation</b>: <a href="Organization-Mustersammlung.html">Organization Mustersammlung</a></p><p><b>MII EX Biobank Diagnose</b>: <a href="https://simplifier.net/resolve?scope=de.basisprofil.r4@1.6.0&amp;canonical=http://fhir.org/packages/de.basisprofil.r4/Diagnose/mii-exa-test-data-patient-1-diagnose-1">Diagnose/mii-exa-test-data-patient-1-diagnose-1</a></p><p><b>MII EX Biobank Ebene</b>: <a href="CodeSystem-mii-cs-biobank-probenebene.html#mii-cs-biobank-probenebene-ALIQUOTGRUPPE">MII CS Biobank Probenebene: ALIQUOTGRUPPE</a> (Aliquotgruppe)</p><p><b>identifier</b>: <code>https://biobank.uk-musterstadt.de/fhir/sid/proben</code>/6789</p><p><b>status</b>: Available</p><p><b>type</b>: <span title="Codes:{http://snomed.info/sct 16214371000119104}, {https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs TissueFreshFrozen}">Specimen from lung obtained by needle biopsy (specimen)</span></p><p><b>subject</b>: <a href="https://simplifier.net/resolve?scope=de.basisprofil.r4@1.6.0&amp;canonical=http://fhir.org/packages/de.basisprofil.r4/Patient/mii-exa-test-data-patient-1">Patient/mii-exa-test-data-patient-1</a></p><p><b>receivedTime</b>: 2018-06-08 15:43:00+0100</p><p><b>request</b>: <a href="ServiceRequest-GewebeBiopsie.html">ServiceRequest Needle biopsy of lung (procedure)</a></p><h3>Collections</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Extension</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td><td><b>BodySite</b></td><td><b>FastingStatus[x]</b></td></tr><tr><td style="display: none">*</td><td/><td>2018-06-08 15:34:00+0100</td><td><span title="Codes:{http://snomed.info/sct 274319000}">Needle biopsy of lung (procedure)</span></td><td><span title="Codes:{http://snomed.info/sct 14559000}">Structure of apex of left lung (body structure)</span></td><td>No display for Duration  (value: 4; system: http://unitsofmeasure.org; code: h)</td></tr></table><blockquote><p><b>processing</b></p><p><b>MII EX Biobank Temperaturbedingungen</b>: 15-25 °C</p><p><b>Sample storage temperature</b>: <span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs RT}">Room temperature</span></p><p><b>procedure</b>: <span title="Codes:{http://snomed.info/sct 1186936003}">Storage of specimen (procedure)</span></p><p><b>time</b>: 2018-06-08 15:34:00+0100 --&gt; 2018-06-08 15:46:00+0100</p></blockquote><blockquote><p><b>processing</b></p><p><b>MII EX Biobank Temperaturbedingungen</b>: -85--60 °C</p><p><b>Sample storage temperature</b>: <span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs -60to-85}">between -60 and -85 degrees Celsius</span></p><p><b>procedure</b>: <span title="Codes:{http://snomed.info/sct 1186936003}, {http://snomed.info/sct 27872000}">Storage of specimen (procedure)</span></p><p><b>time</b>: 2018-06-08 15:49:00+0100 --&gt; (ongoing)</p></blockquote><h3>Containers</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Type</b></td><td><b>SpecimenQuantity</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://snomed.info/sct 83059008}">Tube, device (physical object)</span></td><td>5 g<span style="background: LightGoldenRodYellow"> (Details: UCUM  codeg = 'g')</span></td></tr></table></div>
  </text>
  <extension
             url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/VerwaltendeOrganisation">
    <valueReference>🔗 
      <reference value="Organization/Mustersammlung"/>
    </valueReference>
  </extension>
  <extension
             url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Diagnose">
    <valueReference>
      <reference value="Diagnose/mii-exa-test-data-patient-1-diagnose-1"/>
    </valueReference>
  </extension>
  <extension
             url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene">
    <valueCoding>
      <system
              value="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/CodeSystem/mii-cs-biobank-probenebene"/>
      <code value="ALIQUOTGRUPPE"/>
      <display value="Aliquotgruppe"/>
    </valueCoding>
  </extension>
  <identifier>
    <system value="https://biobank.uk-musterstadt.de/fhir/sid/proben"/>
    <value value="6789"/>
  </identifier>
  <status value="available"/>
  <type>
    <coding>
      <system value="http://snomed.info/sct"/>
      <code value="16214371000119104"/>
      <display
               value="Specimen from lung obtained by needle biopsy (specimen)"/>
    </coding>
    <coding>
      <system
              value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs"/>
      <code value="TissueFreshFrozen"/>
      <display value="Tissue (fresh frozen)"/>
    </coding>
  </type>
  <subject>
    <reference value="Patient/mii-exa-test-data-patient-1"/>
  </subject>
  <receivedTime value="2018-06-08T15:43:00+01:00"/>
  <request>🔗 
    <reference value="ServiceRequest/GewebeBiopsie"/>
  </request>
  <collection>
    <extension
               url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung">
      <valueDateTime value="2018-06-08T15:32:00+01:00"/>
    </extension>
    <collectedDateTime value="2018-06-08T15:34:00+01:00"/>
    <method>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="274319000"/>
        <display value="Needle biopsy of lung (procedure)"/>
      </coding>
    </method>
    <bodySite>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="14559000"/>
        <display value="Structure of apex of left lung (body structure)"/>
      </coding>
    </bodySite>
    <fastingStatusDuration>
      <value value="4"/>
      <system value="http://unitsofmeasure.org"/>
      <code value="h"/>
    </fastingStatusDuration>
  </collection>
  <processing>
    <extension
               url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen">
      <valueRange>
        <low>
          <value value="15"/>
          <unit value="°C"/>
          <system value="http://unitsofmeasure.org"/>
          <code value="Cel"/>
        </low>
        <high>
          <value value="25"/>
          <unit value="°C"/>
          <system value="http://unitsofmeasure.org"/>
          <code value="Cel"/>
        </high>
      </valueRange>
    </extension>
    <extension
               url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-storage-temperature-extension">
      <valueCodeableConcept>
        <coding>
          <system
                  value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs"/>
          <code value="RT"/>
          <display value="Room temperature"/>
        </coding>
      </valueCodeableConcept>
    </extension>
    <procedure>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="1186936003"/>
        <display value="Storage of specimen (procedure)"/>
      </coding>
    </procedure>
    <timePeriod>
      <start value="2018-06-08T15:34:00+01:00"/>
      <end value="2018-06-08T15:46:00+01:00"/>
    </timePeriod>
  </processing>
  <processing>
    <extension
               url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen">
      <valueRange>
        <low>
          <value value="-85"/>
          <unit value="°C"/>
          <system value="http://unitsofmeasure.org"/>
          <code value="Cel"/>
        </low>
        <high>
          <value value="-60"/>
          <unit value="°C"/>
          <system value="http://unitsofmeasure.org"/>
          <code value="Cel"/>
        </high>
      </valueRange>
    </extension>
    <extension
               url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-storage-temperature-extension">
      <valueCodeableConcept>
        <coding>
          <system
                  value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs"/>
          <code value="-60to-85"/>
          <display value="between -60 and -85 degrees Celsius"/>
        </coding>
      </valueCodeableConcept>
    </extension>
    <procedure>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="1186936003"/>
        <display value="Storage of specimen (procedure)"/>
      </coding>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="27872000"/>
        <display value="Specimen freezing (procedure)"/>
      </coding>
    </procedure>
    <timePeriod>
      <start value="2018-06-08T15:49:00+01:00"/>
    </timePeriod>
  </processing>
  <container>
    <type>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="83059008"/>
        <display value="Tube, device (physical object)"/>
      </coding>
    </type>
    <specimenQuantity>
      <value value="5"/>
      <unit value="g"/>
      <system value="http://unitsofmeasure.org"/>
      <code value="g"/>
    </specimenQuantity>
  </container>
</Specimen>