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External Cohort Selector Clinical Domain Agent Since 5.3 ​

The External Cohort Selector uses all provided PIDs without explicit consent checks.

TIP

The process must be started with a manually provided cohort, see execution for details. Running it in All Consented Patients mode will not work.

bash
curl -sSf --data '["id1", "id2", "id3"]' -H "Content-Type: application/json" \
  "https://cd-agent:8080/api/v2/process/example/start"

TIP

The External Cohort Selector also only works, if ignoreConsent in dataSelector is set to true, as no consented period can be extracted from the PIDs.

Example Configuration ​

yaml
external:
  patientIdentifierSystem: "https://example.org/fhir/identifiers/Patient"

patientIdentifierSystem Since 5.3 ​

  • Description: Adds a patient identifier system to the external PIDs.
  • Type: String
  • Example:
    yaml
      patientIdentifierSystem: "https://example.org/fhir/identifiers/Patient"

Notes ​

  • The patientIdentifierSystem field should reference a valid FHIR system.