MII IG Kerndatensatz-Modul Biobank
2027.0.0-ballot - Germany

This page is part of the MII IG Kerndatensatz-Modul Biobank (v2027.0.0-ballot: 2027 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. No current official version has been published yet. For a full list of available versions, see the Directory of published versions

Resource Profile: MII PR Biobank Specimen Bioprobe Core

Official URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/SpecimenCore Version: 2027.0.0-ballot
Active as of 2026-09-10 Computable Name: MII_PR_Biobank_Specimen_Bioprobe_Core

Base profile for representing a MII bioprobe. Not intended for direct implementation, modules derive their own profiles from this profile as needed.

Usages:

You can also check for usages in the FHIR IG Statistics

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots, and their representations.

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen Sample for analysis
... id SΣ 0..1 id Logical id of this artifact
... meta SΣ 0..1 Meta Metadata about the resource
.... source SΣ 0..1 uri Identifies where the resource comes from
.... profile SΣ 0..* canonical(StructureDefinition) Profiles this resource claims to conform to
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
.... extension:feature 0..* (Complex) MII EX Biobank Feature R5
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
.... extension:probenebene S 0..* Coding MII EX Biobank Ebene
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene
Binding: MII VS Biobank Probenebene (required)
.... extension:infektiositaetsstatus S 0..1 CodeableConcept MII EX Biobank Infektiositätsstatus
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-infektiositaetsstatus
Binding: MII VS Biobank Biosafety-Level Einstufung [SNOMED CT] (required)
.... extension:focus S 0..1 Reference(RelatedPerson | Group | Device | Substance | Location) Specimen Focus
URL: http://hl7.eu/fhir/laboratory/StructureDefinition/specimen-focus
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 0..* Identifier
... status ?!SΣ 1..1 code
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type SΣ 1..1 CodeableConcept
Binding: hl7VS-specimenType (example): The type of the specimen.
.... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
..... coding:All Slices Content/Rules for all slices
...... system SΣ 1..1 uri Identity of the terminology system
...... code SΣ 1..1 code Symbol in syntax defined by the system
..... coding:sct SΣ 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Probenart SCT (extensible)
...... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
... subject SΣ 1..1 Reference(Patient)
... receivedTime SΣ 0..1 dateTime The time when specimen was received for processing
... parent S 0..* Reference(Specimen)
... request S 0..* Reference(ServiceRequest)
... collection S 1..1 BackboneElement
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:einstellungBlutversorgung S 0..1 dateTime MII EX Biobank Einstellung Blutversorgung
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collected[x] SΣ 1..1
..... collectedDateTime dateTime
..... collectedPeriod Period
.... quantity S 0..1 SimpleQuantity(4.0.1)
..... Slices for extension Content/Rules for all slices
...... extension:pqTranslation 0..* Quantity Same quantity with different units
URL: http://hl7.org/fhir/StructureDefinition/iso21090-PQ-translation
...... extension:quantityPrecision 0..1 integer Explicit precision (number of significant decimal places)
URL: http://hl7.org/fhir/StructureDefinition/quantity-precision
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... bodySite SC 0..1 CodeableConcept
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
Constraints: mii-bb-1
..... Slices for coding Σ 0..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
...... coding:All Slices Content/Rules for all slices
....... system SΣ 1..1 uri Identity of the terminology system
....... code SΣ 1..1 code Symbol in syntax defined by the system
...... coding:sct SΣ 0..* Coding Code defined by a terminology system
Binding: MII VS Biobank BodyStructures SCT (required)
....... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
...... coding:icd-o-3 SΣ 0..* Coding Code defined by a terminology system
Binding: MII VS Onkologie ICD-O-3 Topographie . (required)
....... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://terminology.hl7.org/CodeSystem/icd-o-3
.... Slices for fastingStatus[x] SΣ 0..1
Slice: Unordered, Open by type:$this
Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
..... fastingStatus[x]:fastingStatusCodeableConcept Σ 0..1 CodeableConcept Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (required)
...... coding Σ 0..* Coding Code defined by a terminology system
....... system SΣ 1..1 uri Identity of the terminology system
....... code SΣ 1..1 code Symbol in syntax defined by the system
... Slices for processing S 0..* BackboneElement
Slice: Unordered, Open by value:$this.procedure
.... processing:All Slices Content/Rules for all slices
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... procedure S 1..1 CodeableConcept
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
...... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
....... coding:All Slices Content/Rules for all slices
........ system SΣ 1..1 uri Identity of the terminology system
........ code SΣ 1..1 code Symbol in syntax defined by the system
....... coding:sct SΣ 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Laboratory Procedure SCT (preferred)
........ system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
..... additive S 0..* Reference(MII PR Biobank Substance Additiv)
..... Slices for time[x] S 0..1 Date and time of specimen processing
Slice: Unordered, Open by type:$this
...... timeDateTime dateTime
...... timePeriod Period
...... time[x]:timePeriod S 0..1 Period
....... start SΣC 0..1 dateTime Starting time with inclusive boundary
....... end SΣC 0..1 dateTime End time with inclusive boundary, if not ongoing
.... processing:lagerprozess S 0..* BackboneElement Processing and processing step details
..... Slices for extension S 1..* Extension Extension
Slice: Unordered, Open by value:url
..... Slices for extension Content/Rules for all slices
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... procedure 1..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
Required Pattern: At least the following
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
...... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
....... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
....... version 0..1 string Version of the system - if relevant
....... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1186936003
....... display 0..1 string Representation defined by the system
....... userSelected 0..1 boolean If this coding was chosen directly by the user
...... text 0..1 string Plain text representation of the concept
..... Slices for time[x] 1..1 Period Date and time of specimen processing
Slice: Unordered, Closed by type:$this
..... Slices for time[x] Content/Rules for all slices
...... time[x]:timePeriod 1..1 Period Date and time of specimen processing
....... start ΣC 1..1 dateTime Starting time with inclusive boundary
... container S 0..* BackboneElement
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... type S 1..1 CodeableConcept
Binding: MII VS Biobank Containertyp SCT (extensible)
..... coding Σ 0..* Coding Code defined by a terminology system
...... system SΣ 1..1 uri Identity of the terminology system
...... code SΣ 1..1 code Symbol in syntax defined by the system
.... capacity S 0..1 SimpleQuantity(4.0.1)
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... specimenQuantity S 0..1 SimpleQuantity(4.0.1)
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... Slices for additive[x] S 0..1
Slice: Unordered, Open by type:$this
Binding: hl7VS-additivePreservative (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
..... additive[x]:additiveReference 0..1 Reference(MII PR Biobank Substance Additiv) Additive associated with container
... note S 0..* Annotation

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example hl7VS-specimenType 📦3.0.0 THO v7.2
Specimen.type.coding:sct Base extensible MII VS Biobank Probenart SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite Base example SNOMED CT Body Structures 📍4.0.1 FHIR Std.
Specimen.collection.​bodySite.coding:sct Base required MII VS Biobank BodyStructures SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite.coding:icd-o-3 Base required MII VS Onkologie ICD-O-3 Topographie . ⏿2025.1.0 127.0.0.1
Specimen.collection.​fastingStatus[x] Base extensible hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.collection.​fastingStatus[x]:fastingStatusCodeableConcept Base required hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.processing.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.processing.​procedure.coding:sct Base preferred MII VS Biobank Laboratory Procedure SCT 📦2027.0.0-ballot This IG
Specimen.processing:lagerprozess.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.container.type Base extensible MII VS Biobank Containertyp SCT 📦2027.0.0-ballot This IG
Specimen.container.additive[x] Base example hl7VS-additivePreservative 📦3.0.0 THO v7.2

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()
mii-bb-1 error Specimen.collection.bodySite Bei der Angabe der Entnahmestelle muss ein ICD-O-3 Topographiecode oder ein SNOMED CT Code angegeben werden. coding.where(system = 'http://snomed.info/sct' or system = 'http://terminology.hl7.org/CodeSystem/icd-o-3').exists()

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen Sample for analysis
... id S 0..1 id Logical id of this artifact
... meta S 0..1 Meta Metadata about the resource
.... source S 0..1 uri Identifies where the resource comes from
.... profile S 0..* canonical(StructureDefinition) Profiles this resource claims to conform to
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:feature 0..* (Complex) MII EX Biobank Feature R5
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
.... extension:probenebene S 0..* Coding MII EX Biobank Ebene
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene
Binding: MII VS Biobank Probenebene (required)
.... extension:infektiositaetsstatus S 0..1 CodeableConcept MII EX Biobank Infektiositätsstatus
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-infektiositaetsstatus
Binding: MII VS Biobank Biosafety-Level Einstufung [SNOMED CT] (required)
.... extension:focus S 0..1 Reference(RelatedPerson | Group | Device | Substance | Location) Specimen Focus
URL: http://hl7.eu/fhir/laboratory/StructureDefinition/specimen-focus
... status S 1..1 code
... type S 1..1 CodeableConcept
.... Slices for coding 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
..... coding:All Slices Content/Rules for all slices
...... system S 1..1 uri Identity of the terminology system
...... code S 1..1 code Symbol in syntax defined by the system
..... coding:sct S 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Probenart SCT (extensible)
...... system 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
... subject S 1..1 Reference(Patient)
... receivedTime S 0..1 dateTime The time when specimen was received for processing
... parent S 0..* Reference(Specimen)
... request S 0..* Reference(ServiceRequest)
... collection S 1..1 BackboneElement
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:einstellungBlutversorgung S 0..1 dateTime MII EX Biobank Einstellung Blutversorgung
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung
.... collected[x] S 1..1 dateTime, Period
.... quantity S 0..1 SimpleQuantity(4.0.1)
..... Slices for extension Content/Rules for all slices
...... extension:pqTranslation 0..* Quantity Same quantity with different units
URL: http://hl7.org/fhir/StructureDefinition/iso21090-PQ-translation
...... extension:quantityPrecision 0..1 integer Explicit precision (number of significant decimal places)
URL: http://hl7.org/fhir/StructureDefinition/quantity-precision
..... value S 1..1 decimal Numerical value (with implicit precision)
..... unit S 1..1 string Unit representation
..... system S 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code S 1..1 code Coded form of the unit
.... bodySite SC 0..1 CodeableConcept
Constraints: mii-bb-1
..... Slices for coding 0..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
...... coding:All Slices Content/Rules for all slices
....... system S 1..1 uri Identity of the terminology system
....... code S 1..1 code Symbol in syntax defined by the system
...... coding:sct S 0..* Coding Code defined by a terminology system
Binding: MII VS Biobank BodyStructures SCT (required)
....... system 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
...... coding:icd-o-3 S 0..* Coding Code defined by a terminology system
Binding: MII VS Onkologie ICD-O-3 Topographie . (required)
....... system 0..1 uri Identity of the terminology system
Required Pattern: http://terminology.hl7.org/CodeSystem/icd-o-3
.... Slices for fastingStatus[x] S 0..1 CodeableConcept, Duration
Slice: Unordered, Open by type:$this
..... fastingStatus[x]:fastingStatusCodeableConcept 0..1 CodeableConcept Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (required)
...... coding
....... system S 1..1 uri Identity of the terminology system
....... code S 1..1 code Symbol in syntax defined by the system
... Slices for processing S 0..* BackboneElement
Slice: Unordered, Open by value:$this.procedure
.... processing:All Slices Content/Rules for all slices
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... procedure S 1..1 CodeableConcept
...... Slices for coding 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
....... coding:All Slices Content/Rules for all slices
........ system S 1..1 uri Identity of the terminology system
........ code S 1..1 code Symbol in syntax defined by the system
....... coding:sct S 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Laboratory Procedure SCT (preferred)
........ system 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
..... additive S 0..* Reference(MII PR Biobank Substance Additiv)
..... Slices for time[x] S 0..1 dateTime, Period Date and time of specimen processing
Slice: Unordered, Open by type:$this
...... time[x]:timePeriod S 0..1 Period
....... start S 0..1 dateTime Starting time with inclusive boundary
....... end S 0..1 dateTime End time with inclusive boundary, if not ongoing
.... processing:lagerprozess S 0..* BackboneElement Processing and processing step details
..... extension S 1..* Extension Extension
..... Slices for extension Content/Rules for all slices
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... procedure 1..1 CodeableConcept Indicates the treatment step applied to the specimen
Required Pattern: At least the following
...... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
....... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
....... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1186936003
..... time[x] 1..1 Period Date and time of specimen processing
..... Slices for time[x] Content/Rules for all slices
...... time[x]:timePeriod 1..1 Period Date and time of specimen processing
....... start 1..1 dateTime Starting time with inclusive boundary
... container S 0..* BackboneElement
.... type S 1..1 CodeableConcept
Binding: MII VS Biobank Containertyp SCT (extensible)
..... coding
...... system S 1..1 uri Identity of the terminology system
...... code S 1..1 code Symbol in syntax defined by the system
.... capacity S 0..1 SimpleQuantity(4.0.1)
..... value S 1..1 decimal Numerical value (with implicit precision)
..... unit S 1..1 string Unit representation
..... system S 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code S 1..1 code Coded form of the unit
.... specimenQuantity S 0..1 SimpleQuantity(4.0.1)
..... value S 1..1 decimal Numerical value (with implicit precision)
..... unit S 1..1 string Unit representation
..... system S 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code S 1..1 code Coded form of the unit
.... Slices for additive[x] S 0..1 CodeableConcept, Reference(Substance)
Slice: Unordered, Open by type:$this
..... additive[x]:additiveReference 0..1 Reference(MII PR Biobank Substance Additiv) Additive associated with container
... note S 0..* Annotation

doco Documentation for this format

Terminology Bindings (Differential)

Path Status Usage ValueSet Version Source
Specimen.type.coding:sct Base extensible MII VS Biobank Probenart SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite.coding:sct Base required MII VS Biobank BodyStructures SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite.coding:icd-o-3 Base required MII VS Onkologie ICD-O-3 Topographie . ⏿2025.1.0 127.0.0.1
Specimen.collection.​fastingStatus[x]:fastingStatusCodeableConcept Base required hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.processing.​procedure.coding:sct Base preferred MII VS Biobank Laboratory Procedure SCT 📦2027.0.0-ballot This IG
Specimen.container.type Base extensible MII VS Biobank Containertyp SCT 📦2027.0.0-ballot This IG

Constraints

Id Grade Path(s) Description Expression
mii-bb-1 error Specimen.collection.bodySite Bei der Angabe der Entnahmestelle muss ein ICD-O-3 Topographiecode oder ein SNOMED CT Code angegeben werden. coding.where(system = 'http://snomed.info/sct' or system = 'http://terminology.hl7.org/CodeSystem/icd-o-3').exists()
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen Sample for analysis
... id SΣ 0..1 id Logical id of this artifact
... meta SΣ 0..1 Meta Metadata about the resource
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... versionId Σ 0..1 id Version specific identifier
.... lastUpdated Σ 0..1 instant When the resource version last changed
.... source SΣ 0..1 uri Identifies where the resource comes from
.... profile SΣ 0..* canonical(StructureDefinition) Profiles this resource claims to conform to
.... security Σ 0..* Coding Security Labels applied to this resource
Binding: All Security Labels (extensible): Security Labels from the Healthcare Privacy and Security Classification System.
.... tag Σ 0..* Coding Tags applied to this resource
Binding: CommonTags (example): Codes that represent various types of tags, commonly workflow-related; e.g. "Needs review by Dr. Jones".
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:feature 0..* (Complex) MII EX Biobank Feature R5
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
.... extension:probenebene S 0..* Coding MII EX Biobank Ebene
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene
Binding: MII VS Biobank Probenebene (required)
.... extension:infektiositaetsstatus S 0..1 CodeableConcept MII EX Biobank Infektiositätsstatus
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-infektiositaetsstatus
Binding: MII VS Biobank Biosafety-Level Einstufung [SNOMED CT] (required)
.... extension:focus S 0..1 Reference(RelatedPerson | Group | Device | Substance | Location) Specimen Focus
URL: http://hl7.eu/fhir/laboratory/StructureDefinition/specimen-focus
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 0..* Identifier
... accessionIdentifier Σ 0..1 Identifier Identifier assigned by the lab
... status ?!SΣ 1..1 code
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type SΣ 1..1 CodeableConcept
Binding: hl7VS-specimenType (example): The type of the specimen.
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
..... coding:All Slices Content/Rules for all slices
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... system SΣ 1..1 uri Identity of the terminology system
...... version Σ 0..1 string Version of the system - if relevant
...... code SΣ 1..1 code Symbol in syntax defined by the system
...... display Σ 0..1 string Representation defined by the system
...... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
..... coding:sct SΣ 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Probenart SCT (extensible)
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
...... version Σ 0..1 string Version of the system - if relevant
...... code Σ 0..1 code Symbol in syntax defined by the system
...... display Σ 0..1 string Representation defined by the system
...... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
... subject SΣ 1..1 Reference(Patient)
... receivedTime SΣ 0..1 dateTime The time when specimen was received for processing
... parent S 0..* Reference(Specimen)
... request S 0..* Reference(ServiceRequest)
... collection S 1..1 BackboneElement
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:einstellungBlutversorgung S 0..1 dateTime MII EX Biobank Einstellung Blutversorgung
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collector Σ 0..1 Reference(Practitioner | PractitionerRole) Who collected the specimen
.... collected[x] SΣ 1..1
..... collectedDateTime dateTime
..... collectedPeriod Period
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity S 0..1 SimpleQuantity(4.0.1)
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... extension:pqTranslation 0..* Quantity Same quantity with different units
URL: http://hl7.org/fhir/StructureDefinition/iso21090-PQ-translation
...... extension:quantityPrecision 0..1 integer Explicit precision (number of significant decimal places)
URL: http://hl7.org/fhir/StructureDefinition/quantity-precision
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
.... bodySite SC 0..1 CodeableConcept
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
Constraints: mii-bb-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... Slices for coding Σ 0..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
...... coding:All Slices Content/Rules for all slices
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... coding:sct SΣ 0..* Coding Code defined by a terminology system
Binding: MII VS Biobank BodyStructures SCT (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
....... version Σ 0..1 string Version of the system - if relevant
....... code Σ 0..1 code Symbol in syntax defined by the system
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... coding:icd-o-3 SΣ 0..* Coding Code defined by a terminology system
Binding: MII VS Onkologie ICD-O-3 Topographie . (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://terminology.hl7.org/CodeSystem/icd-o-3
....... version Σ 0..1 string Version of the system - if relevant
....... code Σ 0..1 code Symbol in syntax defined by the system
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
..... text Σ 0..1 string Plain text representation of the concept
.... Slices for fastingStatus[x] SΣ 0..1
Slice: Unordered, Open by type:$this
Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
..... fastingStatus[x]:fastingStatusCodeableConcept Σ 0..1 CodeableConcept Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (required)
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding Σ 0..* Coding Code defined by a terminology system
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
... Slices for processing S 0..* BackboneElement
Slice: Unordered, Open by value:$this.procedure
.... processing:All Slices Content/Rules for all slices
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... description 0..1 string Textual description of procedure
..... procedure S 1..1 CodeableConcept
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
....... coding:All Slices Content/Rules for all slices
........ id 0..1 string Unique id for inter-element referencing
........ extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
........ system SΣ 1..1 uri Identity of the terminology system
........ version Σ 0..1 string Version of the system - if relevant
........ code SΣ 1..1 code Symbol in syntax defined by the system
........ display Σ 0..1 string Representation defined by the system
........ userSelected Σ 0..1 boolean If this coding was chosen directly by the user
....... coding:sct SΣ 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Laboratory Procedure SCT (preferred)
........ id 0..1 string Unique id for inter-element referencing
........ extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
........ system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
........ version Σ 0..1 string Version of the system - if relevant
........ code Σ 0..1 code Symbol in syntax defined by the system
........ display Σ 0..1 string Representation defined by the system
........ userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... additive S 0..* Reference(MII PR Biobank Substance Additiv)
..... Slices for time[x] S 0..1 Date and time of specimen processing
Slice: Unordered, Open by type:$this
...... timeDateTime dateTime
...... timePeriod Period
...... time[x]:timePeriod S 0..1 Period
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... start SΣC 0..1 dateTime Starting time with inclusive boundary
....... end SΣC 0..1 dateTime End time with inclusive boundary, if not ongoing
.... processing:lagerprozess S 0..* BackboneElement Processing and processing step details
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension S 1..* Extension Extension
Slice: Unordered, Open by value:url
..... Slices for extension Content/Rules for all slices
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... description 0..1 string Textual description of procedure
..... procedure 1..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
Required Pattern: At least the following
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
...... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
....... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
....... version 0..1 string Version of the system - if relevant
....... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1186936003
....... display 0..1 string Representation defined by the system
....... userSelected 0..1 boolean If this coding was chosen directly by the user
...... text 0..1 string Plain text representation of the concept
..... additive 0..* Reference(Substance) Material used in the processing step
..... Slices for time[x] 1..1 Period Date and time of specimen processing
Slice: Unordered, Closed by type:$this
..... Slices for time[x] Content/Rules for all slices
...... time[x]:timePeriod 1..1 Period Date and time of specimen processing
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... start ΣC 1..1 dateTime Starting time with inclusive boundary
....... end ΣC 0..1 dateTime End time with inclusive boundary, if not ongoing
... container S 0..* BackboneElement
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... identifier Σ 0..* Identifier Id for the container
.... description 0..1 string Textual description of the container
.... type S 1..1 CodeableConcept
Binding: MII VS Biobank Containertyp SCT (extensible)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... coding Σ 0..* Coding Code defined by a terminology system
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... system SΣ 1..1 uri Identity of the terminology system
...... version Σ 0..1 string Version of the system - if relevant
...... code SΣ 1..1 code Symbol in syntax defined by the system
...... display Σ 0..1 string Representation defined by the system
...... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
..... text Σ 0..1 string Plain text representation of the concept
.... capacity S 0..1 SimpleQuantity(4.0.1)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... specimenQuantity S 0..1 SimpleQuantity(4.0.1)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... Slices for additive[x] S 0..1
Slice: Unordered, Open by type:$this
Binding: hl7VS-additivePreservative (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
..... additive[x]:additiveReference 0..1 Reference(MII PR Biobank Substance Additiv) Additive associated with container
... condition Σ 0..* CodeableConcept State of the specimen
Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.
... note S 0..* Annotation

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.meta.security Base extensible SecurityLabels 📍4.0.1 FHIR Std.
Specimen.meta.tag Base example Common Tags 📍4.0.1 FHIR Std.
Specimen.language Base preferred Common Languages 📍4.0.1 FHIR Std.
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example hl7VS-specimenType 📦3.0.0 THO v7.2
Specimen.type.coding:sct Base extensible MII VS Biobank Probenart SCT 📦2027.0.0-ballot This IG
Specimen.collection.​method Base example FHIR Specimen Collection Method 📍4.0.1 FHIR Std.
Specimen.collection.​bodySite Base example SNOMED CT Body Structures 📍4.0.1 FHIR Std.
Specimen.collection.​bodySite.coding:sct Base required MII VS Biobank BodyStructures SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite.coding:icd-o-3 Base required MII VS Onkologie ICD-O-3 Topographie . ⏿2025.1.0 127.0.0.1
Specimen.collection.​fastingStatus[x] Base extensible hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.collection.​fastingStatus[x]:fastingStatusCodeableConcept Base required hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.processing.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.processing.​procedure.coding:sct Base preferred MII VS Biobank Laboratory Procedure SCT 📦2027.0.0-ballot This IG
Specimen.processing:lagerprozess.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.container.type Base extensible MII VS Biobank Containertyp SCT 📦2027.0.0-ballot This IG
Specimen.container.additive[x] Base example hl7VS-additivePreservative 📦3.0.0 THO v7.2
Specimen.condition Base extensible hl7VS-specimenCondition 📦3.0.0 THO v7.2

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()
mii-bb-1 error Specimen.collection.bodySite Bei der Angabe der Entnahmestelle muss ein ICD-O-3 Topographiecode oder ein SNOMED CT Code angegeben werden. coding.where(system = 'http://snomed.info/sct' or system = 'http://terminology.hl7.org/CodeSystem/icd-o-3').exists()

Summary

Mandatory: 9 elements(29 nested mandatory elements)
Must-Support: 63 elements

Structures

This structure refers to these other structures:

Extensions

This structure refers to these extensions:

Slices

This structure defines the following Slices:

  • The element 1 is sliced based on the value of Specimen.type.coding
  • The element 1 is sliced based on the value of Specimen.collection.bodySite.coding
  • The element 1 is sliced based on the value of Specimen.collection.fastingStatus[x]
  • The element 1 is sliced based on the value of Specimen.processing
  • The element 1 is sliced based on the value of Specimen.processing.procedure.coding
  • The element 1 is sliced based on the value of Specimen.processing.time[x]
  • The element 1 is sliced based on the value of Specimen.container.additive[x]

Key Elements View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen Sample for analysis
... id SΣ 0..1 id Logical id of this artifact
... meta SΣ 0..1 Meta Metadata about the resource
.... source SΣ 0..1 uri Identifies where the resource comes from
.... profile SΣ 0..* canonical(StructureDefinition) Profiles this resource claims to conform to
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
.... extension:feature 0..* (Complex) MII EX Biobank Feature R5
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
.... extension:probenebene S 0..* Coding MII EX Biobank Ebene
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene
Binding: MII VS Biobank Probenebene (required)
.... extension:infektiositaetsstatus S 0..1 CodeableConcept MII EX Biobank Infektiositätsstatus
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-infektiositaetsstatus
Binding: MII VS Biobank Biosafety-Level Einstufung [SNOMED CT] (required)
.... extension:focus S 0..1 Reference(RelatedPerson | Group | Device | Substance | Location) Specimen Focus
URL: http://hl7.eu/fhir/laboratory/StructureDefinition/specimen-focus
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 0..* Identifier
... status ?!SΣ 1..1 code
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type SΣ 1..1 CodeableConcept
Binding: hl7VS-specimenType (example): The type of the specimen.
.... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
..... coding:All Slices Content/Rules for all slices
...... system SΣ 1..1 uri Identity of the terminology system
...... code SΣ 1..1 code Symbol in syntax defined by the system
..... coding:sct SΣ 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Probenart SCT (extensible)
...... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
... subject SΣ 1..1 Reference(Patient)
... receivedTime SΣ 0..1 dateTime The time when specimen was received for processing
... parent S 0..* Reference(Specimen)
... request S 0..* Reference(ServiceRequest)
... collection S 1..1 BackboneElement
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:einstellungBlutversorgung S 0..1 dateTime MII EX Biobank Einstellung Blutversorgung
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collected[x] SΣ 1..1
..... collectedDateTime dateTime
..... collectedPeriod Period
.... quantity S 0..1 SimpleQuantity(4.0.1)
..... Slices for extension Content/Rules for all slices
...... extension:pqTranslation 0..* Quantity Same quantity with different units
URL: http://hl7.org/fhir/StructureDefinition/iso21090-PQ-translation
...... extension:quantityPrecision 0..1 integer Explicit precision (number of significant decimal places)
URL: http://hl7.org/fhir/StructureDefinition/quantity-precision
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... bodySite SC 0..1 CodeableConcept
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
Constraints: mii-bb-1
..... Slices for coding Σ 0..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
...... coding:All Slices Content/Rules for all slices
....... system SΣ 1..1 uri Identity of the terminology system
....... code SΣ 1..1 code Symbol in syntax defined by the system
...... coding:sct SΣ 0..* Coding Code defined by a terminology system
Binding: MII VS Biobank BodyStructures SCT (required)
....... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
...... coding:icd-o-3 SΣ 0..* Coding Code defined by a terminology system
Binding: MII VS Onkologie ICD-O-3 Topographie . (required)
....... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://terminology.hl7.org/CodeSystem/icd-o-3
.... Slices for fastingStatus[x] SΣ 0..1
Slice: Unordered, Open by type:$this
Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
..... fastingStatus[x]:fastingStatusCodeableConcept Σ 0..1 CodeableConcept Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (required)
...... coding Σ 0..* Coding Code defined by a terminology system
....... system SΣ 1..1 uri Identity of the terminology system
....... code SΣ 1..1 code Symbol in syntax defined by the system
... Slices for processing S 0..* BackboneElement
Slice: Unordered, Open by value:$this.procedure
.... processing:All Slices Content/Rules for all slices
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... procedure S 1..1 CodeableConcept
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
...... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
....... coding:All Slices Content/Rules for all slices
........ system SΣ 1..1 uri Identity of the terminology system
........ code SΣ 1..1 code Symbol in syntax defined by the system
....... coding:sct SΣ 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Laboratory Procedure SCT (preferred)
........ system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
..... additive S 0..* Reference(MII PR Biobank Substance Additiv)
..... Slices for time[x] S 0..1 Date and time of specimen processing
Slice: Unordered, Open by type:$this
...... timeDateTime dateTime
...... timePeriod Period
...... time[x]:timePeriod S 0..1 Period
....... start SΣC 0..1 dateTime Starting time with inclusive boundary
....... end SΣC 0..1 dateTime End time with inclusive boundary, if not ongoing
.... processing:lagerprozess S 0..* BackboneElement Processing and processing step details
..... Slices for extension S 1..* Extension Extension
Slice: Unordered, Open by value:url
..... Slices for extension Content/Rules for all slices
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... procedure 1..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
Required Pattern: At least the following
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
...... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
....... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
....... version 0..1 string Version of the system - if relevant
....... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1186936003
....... display 0..1 string Representation defined by the system
....... userSelected 0..1 boolean If this coding was chosen directly by the user
...... text 0..1 string Plain text representation of the concept
..... Slices for time[x] 1..1 Period Date and time of specimen processing
Slice: Unordered, Closed by type:$this
..... Slices for time[x] Content/Rules for all slices
...... time[x]:timePeriod 1..1 Period Date and time of specimen processing
....... start ΣC 1..1 dateTime Starting time with inclusive boundary
... container S 0..* BackboneElement
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... type S 1..1 CodeableConcept
Binding: MII VS Biobank Containertyp SCT (extensible)
..... coding Σ 0..* Coding Code defined by a terminology system
...... system SΣ 1..1 uri Identity of the terminology system
...... code SΣ 1..1 code Symbol in syntax defined by the system
.... capacity S 0..1 SimpleQuantity(4.0.1)
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... specimenQuantity S 0..1 SimpleQuantity(4.0.1)
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... Slices for additive[x] S 0..1
Slice: Unordered, Open by type:$this
Binding: hl7VS-additivePreservative (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
..... additive[x]:additiveReference 0..1 Reference(MII PR Biobank Substance Additiv) Additive associated with container
... note S 0..* Annotation

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example hl7VS-specimenType 📦3.0.0 THO v7.2
Specimen.type.coding:sct Base extensible MII VS Biobank Probenart SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite Base example SNOMED CT Body Structures 📍4.0.1 FHIR Std.
Specimen.collection.​bodySite.coding:sct Base required MII VS Biobank BodyStructures SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite.coding:icd-o-3 Base required MII VS Onkologie ICD-O-3 Topographie . ⏿2025.1.0 127.0.0.1
Specimen.collection.​fastingStatus[x] Base extensible hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.collection.​fastingStatus[x]:fastingStatusCodeableConcept Base required hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.processing.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.processing.​procedure.coding:sct Base preferred MII VS Biobank Laboratory Procedure SCT 📦2027.0.0-ballot This IG
Specimen.processing:lagerprozess.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.container.type Base extensible MII VS Biobank Containertyp SCT 📦2027.0.0-ballot This IG
Specimen.container.additive[x] Base example hl7VS-additivePreservative 📦3.0.0 THO v7.2

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()
mii-bb-1 error Specimen.collection.bodySite Bei der Angabe der Entnahmestelle muss ein ICD-O-3 Topographiecode oder ein SNOMED CT Code angegeben werden. coding.where(system = 'http://snomed.info/sct' or system = 'http://terminology.hl7.org/CodeSystem/icd-o-3').exists()

Differential View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen Sample for analysis
... id S 0..1 id Logical id of this artifact
... meta S 0..1 Meta Metadata about the resource
.... source S 0..1 uri Identifies where the resource comes from
.... profile S 0..* canonical(StructureDefinition) Profiles this resource claims to conform to
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:feature 0..* (Complex) MII EX Biobank Feature R5
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
.... extension:probenebene S 0..* Coding MII EX Biobank Ebene
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene
Binding: MII VS Biobank Probenebene (required)
.... extension:infektiositaetsstatus S 0..1 CodeableConcept MII EX Biobank Infektiositätsstatus
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-infektiositaetsstatus
Binding: MII VS Biobank Biosafety-Level Einstufung [SNOMED CT] (required)
.... extension:focus S 0..1 Reference(RelatedPerson | Group | Device | Substance | Location) Specimen Focus
URL: http://hl7.eu/fhir/laboratory/StructureDefinition/specimen-focus
... status S 1..1 code
... type S 1..1 CodeableConcept
.... Slices for coding 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
..... coding:All Slices Content/Rules for all slices
...... system S 1..1 uri Identity of the terminology system
...... code S 1..1 code Symbol in syntax defined by the system
..... coding:sct S 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Probenart SCT (extensible)
...... system 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
... subject S 1..1 Reference(Patient)
... receivedTime S 0..1 dateTime The time when specimen was received for processing
... parent S 0..* Reference(Specimen)
... request S 0..* Reference(ServiceRequest)
... collection S 1..1 BackboneElement
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:einstellungBlutversorgung S 0..1 dateTime MII EX Biobank Einstellung Blutversorgung
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung
.... collected[x] S 1..1 dateTime, Period
.... quantity S 0..1 SimpleQuantity(4.0.1)
..... Slices for extension Content/Rules for all slices
...... extension:pqTranslation 0..* Quantity Same quantity with different units
URL: http://hl7.org/fhir/StructureDefinition/iso21090-PQ-translation
...... extension:quantityPrecision 0..1 integer Explicit precision (number of significant decimal places)
URL: http://hl7.org/fhir/StructureDefinition/quantity-precision
..... value S 1..1 decimal Numerical value (with implicit precision)
..... unit S 1..1 string Unit representation
..... system S 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code S 1..1 code Coded form of the unit
.... bodySite SC 0..1 CodeableConcept
Constraints: mii-bb-1
..... Slices for coding 0..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
...... coding:All Slices Content/Rules for all slices
....... system S 1..1 uri Identity of the terminology system
....... code S 1..1 code Symbol in syntax defined by the system
...... coding:sct S 0..* Coding Code defined by a terminology system
Binding: MII VS Biobank BodyStructures SCT (required)
....... system 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
...... coding:icd-o-3 S 0..* Coding Code defined by a terminology system
Binding: MII VS Onkologie ICD-O-3 Topographie . (required)
....... system 0..1 uri Identity of the terminology system
Required Pattern: http://terminology.hl7.org/CodeSystem/icd-o-3
.... Slices for fastingStatus[x] S 0..1 CodeableConcept, Duration
Slice: Unordered, Open by type:$this
..... fastingStatus[x]:fastingStatusCodeableConcept 0..1 CodeableConcept Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (required)
...... coding
....... system S 1..1 uri Identity of the terminology system
....... code S 1..1 code Symbol in syntax defined by the system
... Slices for processing S 0..* BackboneElement
Slice: Unordered, Open by value:$this.procedure
.... processing:All Slices Content/Rules for all slices
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... procedure S 1..1 CodeableConcept
...... Slices for coding 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
....... coding:All Slices Content/Rules for all slices
........ system S 1..1 uri Identity of the terminology system
........ code S 1..1 code Symbol in syntax defined by the system
....... coding:sct S 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Laboratory Procedure SCT (preferred)
........ system 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
..... additive S 0..* Reference(MII PR Biobank Substance Additiv)
..... Slices for time[x] S 0..1 dateTime, Period Date and time of specimen processing
Slice: Unordered, Open by type:$this
...... time[x]:timePeriod S 0..1 Period
....... start S 0..1 dateTime Starting time with inclusive boundary
....... end S 0..1 dateTime End time with inclusive boundary, if not ongoing
.... processing:lagerprozess S 0..* BackboneElement Processing and processing step details
..... extension S 1..* Extension Extension
..... Slices for extension Content/Rules for all slices
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... procedure 1..1 CodeableConcept Indicates the treatment step applied to the specimen
Required Pattern: At least the following
...... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
....... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
....... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1186936003
..... time[x] 1..1 Period Date and time of specimen processing
..... Slices for time[x] Content/Rules for all slices
...... time[x]:timePeriod 1..1 Period Date and time of specimen processing
....... start 1..1 dateTime Starting time with inclusive boundary
... container S 0..* BackboneElement
.... type S 1..1 CodeableConcept
Binding: MII VS Biobank Containertyp SCT (extensible)
..... coding
...... system S 1..1 uri Identity of the terminology system
...... code S 1..1 code Symbol in syntax defined by the system
.... capacity S 0..1 SimpleQuantity(4.0.1)
..... value S 1..1 decimal Numerical value (with implicit precision)
..... unit S 1..1 string Unit representation
..... system S 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code S 1..1 code Coded form of the unit
.... specimenQuantity S 0..1 SimpleQuantity(4.0.1)
..... value S 1..1 decimal Numerical value (with implicit precision)
..... unit S 1..1 string Unit representation
..... system S 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code S 1..1 code Coded form of the unit
.... Slices for additive[x] S 0..1 CodeableConcept, Reference(Substance)
Slice: Unordered, Open by type:$this
..... additive[x]:additiveReference 0..1 Reference(MII PR Biobank Substance Additiv) Additive associated with container
... note S 0..* Annotation

doco Documentation for this format

Terminology Bindings (Differential)

Path Status Usage ValueSet Version Source
Specimen.type.coding:sct Base extensible MII VS Biobank Probenart SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite.coding:sct Base required MII VS Biobank BodyStructures SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite.coding:icd-o-3 Base required MII VS Onkologie ICD-O-3 Topographie . ⏿2025.1.0 127.0.0.1
Specimen.collection.​fastingStatus[x]:fastingStatusCodeableConcept Base required hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.processing.​procedure.coding:sct Base preferred MII VS Biobank Laboratory Procedure SCT 📦2027.0.0-ballot This IG
Specimen.container.type Base extensible MII VS Biobank Containertyp SCT 📦2027.0.0-ballot This IG

Constraints

Id Grade Path(s) Description Expression
mii-bb-1 error Specimen.collection.bodySite Bei der Angabe der Entnahmestelle muss ein ICD-O-3 Topographiecode oder ein SNOMED CT Code angegeben werden. coding.where(system = 'http://snomed.info/sct' or system = 'http://terminology.hl7.org/CodeSystem/icd-o-3').exists()

Snapshot ViewView

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen Sample for analysis
... id SΣ 0..1 id Logical id of this artifact
... meta SΣ 0..1 Meta Metadata about the resource
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... versionId Σ 0..1 id Version specific identifier
.... lastUpdated Σ 0..1 instant When the resource version last changed
.... source SΣ 0..1 uri Identifies where the resource comes from
.... profile SΣ 0..* canonical(StructureDefinition) Profiles this resource claims to conform to
.... security Σ 0..* Coding Security Labels applied to this resource
Binding: All Security Labels (extensible): Security Labels from the Healthcare Privacy and Security Classification System.
.... tag Σ 0..* Coding Tags applied to this resource
Binding: CommonTags (example): Codes that represent various types of tags, commonly workflow-related; e.g. "Needs review by Dr. Jones".
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:feature 0..* (Complex) MII EX Biobank Feature R5
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
.... extension:probenebene S 0..* Coding MII EX Biobank Ebene
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene
Binding: MII VS Biobank Probenebene (required)
.... extension:infektiositaetsstatus S 0..1 CodeableConcept MII EX Biobank Infektiositätsstatus
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-infektiositaetsstatus
Binding: MII VS Biobank Biosafety-Level Einstufung [SNOMED CT] (required)
.... extension:focus S 0..1 Reference(RelatedPerson | Group | Device | Substance | Location) Specimen Focus
URL: http://hl7.eu/fhir/laboratory/StructureDefinition/specimen-focus
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 0..* Identifier
... accessionIdentifier Σ 0..1 Identifier Identifier assigned by the lab
... status ?!SΣ 1..1 code
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type SΣ 1..1 CodeableConcept
Binding: hl7VS-specimenType (example): The type of the specimen.
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
..... coding:All Slices Content/Rules for all slices
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... system SΣ 1..1 uri Identity of the terminology system
...... version Σ 0..1 string Version of the system - if relevant
...... code SΣ 1..1 code Symbol in syntax defined by the system
...... display Σ 0..1 string Representation defined by the system
...... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
..... coding:sct SΣ 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Probenart SCT (extensible)
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
...... version Σ 0..1 string Version of the system - if relevant
...... code Σ 0..1 code Symbol in syntax defined by the system
...... display Σ 0..1 string Representation defined by the system
...... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
... subject SΣ 1..1 Reference(Patient)
... receivedTime SΣ 0..1 dateTime The time when specimen was received for processing
... parent S 0..* Reference(Specimen)
... request S 0..* Reference(ServiceRequest)
... collection S 1..1 BackboneElement
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:einstellungBlutversorgung S 0..1 dateTime MII EX Biobank Einstellung Blutversorgung
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... collector Σ 0..1 Reference(Practitioner | PractitionerRole) Who collected the specimen
.... collected[x] SΣ 1..1
..... collectedDateTime dateTime
..... collectedPeriod Period
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity S 0..1 SimpleQuantity(4.0.1)
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... extension:pqTranslation 0..* Quantity Same quantity with different units
URL: http://hl7.org/fhir/StructureDefinition/iso21090-PQ-translation
...... extension:quantityPrecision 0..1 integer Explicit precision (number of significant decimal places)
URL: http://hl7.org/fhir/StructureDefinition/quantity-precision
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
.... bodySite SC 0..1 CodeableConcept
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
Constraints: mii-bb-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... Slices for coding Σ 0..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
...... coding:All Slices Content/Rules for all slices
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... coding:sct SΣ 0..* Coding Code defined by a terminology system
Binding: MII VS Biobank BodyStructures SCT (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
....... version Σ 0..1 string Version of the system - if relevant
....... code Σ 0..1 code Symbol in syntax defined by the system
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... coding:icd-o-3 SΣ 0..* Coding Code defined by a terminology system
Binding: MII VS Onkologie ICD-O-3 Topographie . (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://terminology.hl7.org/CodeSystem/icd-o-3
....... version Σ 0..1 string Version of the system - if relevant
....... code Σ 0..1 code Symbol in syntax defined by the system
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
..... text Σ 0..1 string Plain text representation of the concept
.... Slices for fastingStatus[x] SΣ 0..1
Slice: Unordered, Open by type:$this
Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
..... fastingStatus[x]:fastingStatusCodeableConcept Σ 0..1 CodeableConcept Whether or how long patient abstained from food and/or drink
Binding: hl7VS-relevantClincialInformation (required)
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding Σ 0..* Coding Code defined by a terminology system
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
... Slices for processing S 0..* BackboneElement
Slice: Unordered, Open by value:$this.procedure
.... processing:All Slices Content/Rules for all slices
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... description 0..1 string Textual description of procedure
..... procedure S 1..1 CodeableConcept
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... Slices for coding Σ 1..* Coding Code defined by a terminology system
Slice: Unordered, Open by value:$this.system
....... coding:All Slices Content/Rules for all slices
........ id 0..1 string Unique id for inter-element referencing
........ extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
........ system SΣ 1..1 uri Identity of the terminology system
........ version Σ 0..1 string Version of the system - if relevant
........ code SΣ 1..1 code Symbol in syntax defined by the system
........ display Σ 0..1 string Representation defined by the system
........ userSelected Σ 0..1 boolean If this coding was chosen directly by the user
....... coding:sct SΣ 1..* Coding Code defined by a terminology system
Binding: MII VS Biobank Laboratory Procedure SCT (preferred)
........ id 0..1 string Unique id for inter-element referencing
........ extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
........ system Σ 0..1 uri Identity of the terminology system
Required Pattern: http://snomed.info/sct
........ version Σ 0..1 string Version of the system - if relevant
........ code Σ 0..1 code Symbol in syntax defined by the system
........ display Σ 0..1 string Representation defined by the system
........ userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... additive S 0..* Reference(MII PR Biobank Substance Additiv)
..... Slices for time[x] S 0..1 Date and time of specimen processing
Slice: Unordered, Open by type:$this
...... timeDateTime dateTime
...... timePeriod Period
...... time[x]:timePeriod S 0..1 Period
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... start SΣC 0..1 dateTime Starting time with inclusive boundary
....... end SΣC 0..1 dateTime End time with inclusive boundary, if not ongoing
.... processing:lagerprozess S 0..* BackboneElement Processing and processing step details
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension S 1..* Extension Extension
Slice: Unordered, Open by value:url
..... Slices for extension Content/Rules for all slices
...... extension:temperaturbedingungen S 0..1 Range MII EX Biobank Temperaturbedingungen
URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... description 0..1 string Textual description of procedure
..... procedure 1..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
Required Pattern: At least the following
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
...... coding 1..* Coding Code defined by a terminology system
Fixed Value: (Complex)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
....... system 1..1 uri Identity of the terminology system
Fixed Value: http://snomed.info/sct
....... version 0..1 string Version of the system - if relevant
....... code 1..1 code Symbol in syntax defined by the system
Fixed Value: 1186936003
....... display 0..1 string Representation defined by the system
....... userSelected 0..1 boolean If this coding was chosen directly by the user
...... text 0..1 string Plain text representation of the concept
..... additive 0..* Reference(Substance) Material used in the processing step
..... Slices for time[x] 1..1 Period Date and time of specimen processing
Slice: Unordered, Closed by type:$this
..... Slices for time[x] Content/Rules for all slices
...... time[x]:timePeriod 1..1 Period Date and time of specimen processing
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... start ΣC 1..1 dateTime Starting time with inclusive boundary
....... end ΣC 0..1 dateTime End time with inclusive boundary, if not ongoing
... container S 0..* BackboneElement
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... identifier Σ 0..* Identifier Id for the container
.... description 0..1 string Textual description of the container
.... type S 1..1 CodeableConcept
Binding: MII VS Biobank Containertyp SCT (extensible)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... coding Σ 0..* Coding Code defined by a terminology system
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... system SΣ 1..1 uri Identity of the terminology system
...... version Σ 0..1 string Version of the system - if relevant
...... code SΣ 1..1 code Symbol in syntax defined by the system
...... display Σ 0..1 string Representation defined by the system
...... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
..... text Σ 0..1 string Plain text representation of the concept
.... capacity S 0..1 SimpleQuantity(4.0.1)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... specimenQuantity S 0..1 SimpleQuantity(4.0.1)
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... value SΣ 1..1 decimal Numerical value (with implicit precision)
..... unit SΣ 1..1 string Unit representation
..... system SΣC 1..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
..... code SΣ 1..1 code Coded form of the unit
.... Slices for additive[x] S 0..1
Slice: Unordered, Open by type:$this
Binding: hl7VS-additivePreservative (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
..... additive[x]:additiveReference 0..1 Reference(MII PR Biobank Substance Additiv) Additive associated with container
... condition Σ 0..* CodeableConcept State of the specimen
Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.
... note S 0..* Annotation

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.meta.security Base extensible SecurityLabels 📍4.0.1 FHIR Std.
Specimen.meta.tag Base example Common Tags 📍4.0.1 FHIR Std.
Specimen.language Base preferred Common Languages 📍4.0.1 FHIR Std.
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example hl7VS-specimenType 📦3.0.0 THO v7.2
Specimen.type.coding:sct Base extensible MII VS Biobank Probenart SCT 📦2027.0.0-ballot This IG
Specimen.collection.​method Base example FHIR Specimen Collection Method 📍4.0.1 FHIR Std.
Specimen.collection.​bodySite Base example SNOMED CT Body Structures 📍4.0.1 FHIR Std.
Specimen.collection.​bodySite.coding:sct Base required MII VS Biobank BodyStructures SCT 📦2027.0.0-ballot This IG
Specimen.collection.​bodySite.coding:icd-o-3 Base required MII VS Onkologie ICD-O-3 Topographie . ⏿2025.1.0 127.0.0.1
Specimen.collection.​fastingStatus[x] Base extensible hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.collection.​fastingStatus[x]:fastingStatusCodeableConcept Base required hl7VS-relevantClincialInformation 📦3.0.0 THO v7.2
Specimen.processing.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.processing.​procedure.coding:sct Base preferred MII VS Biobank Laboratory Procedure SCT 📦2027.0.0-ballot This IG
Specimen.processing:lagerprozess.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.container.type Base extensible MII VS Biobank Containertyp SCT 📦2027.0.0-ballot This IG
Specimen.container.additive[x] Base example hl7VS-additivePreservative 📦3.0.0 THO v7.2
Specimen.condition Base extensible hl7VS-specimenCondition 📦3.0.0 THO v7.2

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()
mii-bb-1 error Specimen.collection.bodySite Bei der Angabe der Entnahmestelle muss ein ICD-O-3 Topographiecode oder ein SNOMED CT Code angegeben werden. coding.where(system = 'http://snomed.info/sct' or system = 'http://terminology.hl7.org/CodeSystem/icd-o-3').exists()

Summary

Mandatory: 9 elements(29 nested mandatory elements)
Must-Support: 63 elements

Structures

This structure refers to these other structures:

Extensions

This structure refers to these extensions:

Slices

This structure defines the following Slices:

  • The element 1 is sliced based on the value of Specimen.type.coding
  • The element 1 is sliced based on the value of Specimen.collection.bodySite.coding
  • The element 1 is sliced based on the value of Specimen.collection.fastingStatus[x]
  • The element 1 is sliced based on the value of Specimen.processing
  • The element 1 is sliced based on the value of Specimen.processing.procedure.coding
  • The element 1 is sliced based on the value of Specimen.processing.time[x]
  • The element 1 is sliced based on the value of Specimen.container.additive[x]

 

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