MII IG Kerndatensatz-Modul Molekulares Tumorboard
2027.0.0-ballot.1 -
Germany
MII IG Kerndatensatz-Modul Molekulares Tumorboard
2027.0.0-ballot.1 -
Germany
This page is part of the MII Implementation Guide Molecular Tumor Board (v2027.0.0-ballot.1: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions
| Official URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-genomic-study-analysis | Version: 2027.0.0-ballot.1 | |||
| Active as of 2026-09-15 | Computable Name: MII_PR_MTB_Genomic_Study_Analysis | |||
Die Genomic Study Analysis beschreibt die Methodik einer bestimmten molekulargenetischen Untersuchung.
This profile describes the Genomics Study Analysis.
This profile describes the Genomics Study. Since the structure, scope, and content of genomic analysis reports differ significantly from other diagnostic reports (laboratory, imaging, pathology, microbiology…), a GenomicStudy resource was introduced in FHIR R5 that contains all relevant data elements.
Since many national and international organizations continue to rely on FHIR R4, there was an official backport, so that the contents of an R5 GenomicStudy can be represented via a superordinate GenomicStudy procedure and subordinate GenomicStudyAnalysis procedures. The GenomicStudyAnalysis contains precise data on the devices used, methodology, reference genome, etc.
The GenomicStudyAnalysis is linked to the NGS-Bericht (NGS report) via the GenomicStudy. The GenomicStudyAnalysis itself contains references to other devices and materials, which are represented in FHIR as Device resources. For this purpose, in the present
Search parameters
The following search parameters are relevant for the Oncology module, including in combination:
The search parameter "_id" MUST be supported:
Examples:
GET [base]/Observation?_id=12345
Usage notes: Further information on searching for "_id" can be found in the FHIR base specification - section "Parameters for all resources".
The search parameter "_profile" MUST be supported:
Examples:
GET [base]/Procedure?_profile=https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/genomic-study-analysis
Usage notes: Further information on searching for "_profile" can be found in the FHIR base specification - section "Parameters for all resources".
The search parameter "focus" MUST be supported:
Examples:
GET [base]/Procedure?focus=Condition/example-mii-mtb-diagnose
Usage notes: Further information on searching for "focus" can be found in the FHIR base specification - section "reference".
The search parameter "specimen" MUST be supported:
Examples:
GET [base]/Procedure?specimen=Specimen/example-mii-mtb-specimen
Usage notes: Further information on searching for "specimen" can be found in the FHIR base specification - section "reference".
The search parameter "device" MUST be supported:
Examples:
GET [base]/Procedure?device=Device/example-mii-molgen-device-sequencer
Usage notes: Further information on searching for "device" can be found in the FHIR base specification - section "reference".
The search parameter "category" MUST be supported:
Examples:
GET [base]/Procedure?category=http://terminology.hl7.org/CodeSystem/observation-category|laboratory
Usage notes: Further information on searching for "category" can be found in the FHIR base specification - section "token".
Examples
Usages:
You can also check for usages in the FHIR IG Statistics
Description of Profiles, Differentials, Snapshots, and their representations.
| Path | Status | Usage | ValueSet | Version | Source |
| Procedure.extension:method-type.value[x] | Base | required | MII VS Genomic Analysis Method Type | 📦2027.0.0-ballot.1 | This IG |
| Procedure.status | Base | required | EventStatus | 📍4.0.1 | FHIR Std. |
| Procedure.category | Base | example | Procedure Category Codes (SNOMED CT) | 📦4.0.1 | FHIR Std. |
| Id | Grade | Path(s) | Description | Expression |
| dom-2 | error | Procedure | If the resource is contained in another resource, it SHALL NOT contain nested Resources |
contained.contained.empty()
|
| dom-3 | error | Procedure | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource |
contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
|
| dom-4 | error | Procedure | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated |
contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
|
| dom-5 | error | Procedure | If a resource is contained in another resource, it SHALL NOT have a security label |
contained.meta.security.empty()
|
| dom-6 | best practice | Procedure | A resource should have narrative for robust management |
text.`div`.exists()
|
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children |
hasValue() or (children().count() > id.count())
|
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both |
extension.exists() != value.exists()
|
| Name | Flags | Card. | Type | Description & Constraints Filter:   |
|---|---|---|---|---|
  Procedure |
0..* | MII_PR_MolGen_GenomicStudyAnalysis | An action that is being or was performed on a patient | |
  meta |
S | 0..1 | Meta | Metadata about the resource |
  profile |
S | 0..* | canonical(StructureDefinition) | Profiles this resource claims to conform to |
  extension |
S | 0..* | Extension | Extension |
 Slices for extension |
Content/Rules for all slices | |||
  extension:method-type |
0..* | GenomicStudyAnalysisMethodType | Genomic Study Analysis Method Type | |
  value[x] |
0..1 | CodeableConcept | cytogenetics | deletion-duplication-analysis | fish | sequence-analysis-of-the-entire-coding-region | ... (many) Binding: MII VS Genomic Analysis Method Type (required) | |
 extension:qc |
S | 0..1 | (Complex) | MII EX MTB Antrag GenomicsStudyAnalysis Metrics URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-ex-mtb-genomic-study-analysis-qc |
| identifier |
S | 0..* | Identifier | GenomicStudy.analysis.identifier |
| status |
S | 1..1 | code | preparation | in-progress | not-done | on-hold | stopped | completed | entered-in-error | unknown |
| category |
S | 1..1 | CodeableConcept | Classification of the procedure |
| performed[x] |
S | 0..1 | dateTime | GenomicStudy.analysis.date |
| Documentation for this format | ||||
| Path | Status | Usage | ValueSet | Version | Source |
| Procedure.extension:method-type.value[x] | Base | required | MII VS Genomic Analysis Method Type | 📦2027.0.0-ballot.1 | This IG |
| Name | Flags | Card. | Type | Description & Constraints Filter: | ||||
|---|---|---|---|---|---|---|---|---|
| Procedure |
0..* | MII_PR_MolGen_GenomicStudyAnalysis | An action that is being or was performed on a patient | |||||
 id |
Σ | 0..1 | id | Logical id of this artifact | ||||
 meta |
SΣ | 0..1 | Meta | Metadata about the resource | ||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
| versionId |
Σ | 0..1 | id | Version specific identifier | ||||
| lastUpdated |
Σ | 0..1 | instant | When the resource version last changed | ||||
| source |
Σ | 0..1 | uri | Identifies where the resource comes from | ||||
| profile |
SΣ | 0..* | canonical(StructureDefinition) | Profiles this resource claims to conform to | ||||
| security |
Σ | 0..* | Coding | Security Labels applied to this resource Binding: All Security Labels (extensible): Security Labels from the Healthcare Privacy and Security Classification System. | ||||
| tag |
Σ | 0..* | Coding | Tags applied to this resource Binding: CommonTags (example): Codes that represent various types of tags, commonly workflow-related; e.g. "Needs review by Dr. Jones". | ||||
| implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
| language |
0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
| |||||
| text |
0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements | |||||
| contained |
0..* | Resource | Contained, inline Resources | |||||
| Slices for extension |
S | 0..* | Extension | Extension Slice: Unordered, Open by value:url | ||||
| extension:method-type |
S | 0..* | (Complex) | Genomic Study Analysis Method Type URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-method-type | ||||
 id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..0 | Extension Slice: Unordered, Open by value:url | ||||||
| url |
1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-method-type" | |||||
| value[x] |
0..1 | CodeableConcept | cytogenetics | deletion-duplication-analysis | fish | sequence-analysis-of-the-entire-coding-region | ... (many) Binding: MII VS Genomic Analysis Method Type (required) | |||||
 extension:change-type |
S | 0..* | CodeableConcept | Untersuchte Variationstypen URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-change-type Binding: Genomic Study Change Type ValueSet (preferred) | ||||
| extension:genome-build |
S | 0..1 | CodeableConcept | Referenzgenom-Version URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genome-build Binding: LOINC Answer List LL1040-6 (extensible) | ||||
| extension:genomic-source-class |
0..1 | CodeableConcept | GenomicStudy.analysis.genomicSourceClass URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genomic-source-class Binding: LOINC Answer List LL378-1 (extensible) | |||||
| extension:title |
S | 0..1 | string | Bezeichnung der Analyse URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-title | ||||
| extension:focus |
S | 0..* | Reference(Resource) | Fokus der Analyse URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-focus | ||||
| extension:specimen |
S | 0..* | Reference(Specimen) | Untersuchte Probe URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen | ||||
| extension:metrics |
S | 0..1 | (Complex) | Qualitätsmetriken URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-metrics | ||||
| extension:regions |
S | 0..1 | (Complex) | Untersuchte genomische Regionen URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-regions | ||||
| extension:device |
S | 0..* | (Complex) | Verwendetes Analysegerät URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device | ||||
| extension:protocol-performed |
0..1 | Reference(Procedure | Task) | GenomicStudy.protocolPerformed URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-protocol-performed | |||||
| extension:input |
0..* | (Complex) | GenomicStudy.analysis.input URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input | |||||
| extension:output |
0..* | (Complex) | GenomicStudy.analysis.output URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output | |||||
| extension:qc |
S | 0..1 | (Complex) | MII EX MTB Antrag GenomicsStudyAnalysis Metrics URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-ex-mtb-genomic-study-analysis-qc | ||||
 modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored | ||||
| identifier |
SΣ | 0..* | Identifier | GenomicStudy.analysis.identifier | ||||
| instantiatesCanonical |
Σ | 0..* | canonical(PlanDefinition | ActivityDefinition) | GenomicStudy.analysis.instantiatesCanonical | ||||
| instantiatesUri |
Σ | 0..* | uri | GenomicStudy.analysis.instantiatesUri | ||||
| status |
?!SΣ | 1..1 | code | preparation | in-progress | not-done | on-hold | stopped | completed | entered-in-error | unknown Binding: EventStatus (required): A code specifying the state of the procedure. Required Pattern: completed | ||||
| category |
SΣ | 1..1 | CodeableConcept | Classification of the procedure Binding: ProcedureCategoryCodes(SNOMEDCT) (example): A code that classifies a procedure for searching, sorting and display purposes. | ||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
| coding |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following | ||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
 system |
1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/observation-category | |||||
| version |
0..1 | string | Version of the system - if relevant | |||||
| code |
1..1 | code | Symbol in syntax defined by the system Fixed Value: laboratory | |||||
| display |
0..1 | string | Representation defined by the system | |||||
| userSelected |
0..1 | boolean | If this coding was chosen directly by the user | |||||
| text |
Σ | 0..1 | string | Plain text representation of the concept | ||||
 subject |
Σ | 1..1 | Reference(Patient | Group) | Who the procedure was performed on | ||||
| performed[x] |
SΣ | 0..1 | dateTime | GenomicStudy.analysis.date | ||||
| performer |
Σ | 0..* | BackboneElement | The people who performed the procedure | ||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
| function |
Σ | 0..1 | CodeableConcept | GenomicStudy.analysis.performer.role Binding: ProcedurePerformerRoleCodes (example): A code that identifies the role of a performer of the procedure. | ||||
| actor |
Σ | 1..1 | Reference(Practitioner | PractitionerRole | Organization | Device) | GenomicStudy.analysis.performer.actor | ||||
| onBehalfOf |
0..1 | Reference(Organization) | Organization the device or practitioner was acting for | |||||
| note |
0..* | Annotation | GenomicStudy.analysis.note | |||||
| Documentation for this format | ||||||||
| Path | Status | Usage | ValueSet | Version | Source |
| Procedure.meta.security | Base | extensible | SecurityLabels | 📍4.0.1 | FHIR Std. |
| Procedure.meta.tag | Base | example | Common Tags | 📍4.0.1 | FHIR Std. |
| Procedure.language | Base | preferred | Common Languages | 📦4.0.1 | FHIR Std. |
| Procedure.extension:method-type.value[x] | Base | required | MII VS Genomic Analysis Method Type | 📦2027.0.0-ballot.1 | This IG |
| Procedure.status | Base | required | EventStatus | 📍4.0.1 | FHIR Std. |
| Procedure.category | Base | example | Procedure Category Codes (SNOMED CT) | 📦4.0.1 | FHIR Std. |
| Procedure.performer.function | Base | example | Procedure Performer Role Codes | 📦4.0.1 | FHIR Std. |
| Procedure.focalDevice.action | Base | preferred | Procedure Device Action Codes | 📦4.0.1 | FHIR Std. |
| Id | Grade | Path(s) | Description | Expression |
| dom-2 | error | Procedure | If the resource is contained in another resource, it SHALL NOT contain nested Resources |
contained.contained.empty()
|
| dom-3 | error | Procedure | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource |
contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
|
| dom-4 | error | Procedure | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated |
contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
|
| dom-5 | error | Procedure | If a resource is contained in another resource, it SHALL NOT have a security label |
contained.meta.security.empty()
|
| dom-6 | best practice | Procedure | A resource should have narrative for robust management |
text.`div`.exists()
|
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children |
hasValue() or (children().count() > id.count())
|
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both |
extension.exists() != value.exists()
|
Key Elements View
| Path | Status | Usage | ValueSet | Version | Source |
| Procedure.extension:method-type.value[x] | Base | required | MII VS Genomic Analysis Method Type | 📦2027.0.0-ballot.1 | This IG |
| Procedure.status | Base | required | EventStatus | 📍4.0.1 | FHIR Std. |
| Procedure.category | Base | example | Procedure Category Codes (SNOMED CT) | 📦4.0.1 | FHIR Std. |
| Id | Grade | Path(s) | Description | Expression |
| dom-2 | error | Procedure | If the resource is contained in another resource, it SHALL NOT contain nested Resources |
contained.contained.empty()
|
| dom-3 | error | Procedure | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource |
contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
|
| dom-4 | error | Procedure | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated |
contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
|
| dom-5 | error | Procedure | If a resource is contained in another resource, it SHALL NOT have a security label |
contained.meta.security.empty()
|
| dom-6 | best practice | Procedure | A resource should have narrative for robust management |
text.`div`.exists()
|
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children |
hasValue() or (children().count() > id.count())
|
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both |
extension.exists() != value.exists()
|
Differential View
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Procedure |
0..* | MII_PR_MolGen_GenomicStudyAnalysis | An action that is being or was performed on a patient | |
| meta |
S | 0..1 | Meta | Metadata about the resource |
| profile |
S | 0..* | canonical(StructureDefinition) | Profiles this resource claims to conform to |
| extension |
S | 0..* | Extension | Extension |
| Slices for extension |
Content/Rules for all slices | |||
| extension:method-type |
0..* | GenomicStudyAnalysisMethodType | Genomic Study Analysis Method Type | |
| value[x] |
0..1 | CodeableConcept | cytogenetics | deletion-duplication-analysis | fish | sequence-analysis-of-the-entire-coding-region | ... (many) Binding: MII VS Genomic Analysis Method Type (required) | |
| extension:qc |
S | 0..1 | (Complex) | MII EX MTB Antrag GenomicsStudyAnalysis Metrics URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-ex-mtb-genomic-study-analysis-qc |
| identifier |
S | 0..* | Identifier | GenomicStudy.analysis.identifier |
| status |
S | 1..1 | code | preparation | in-progress | not-done | on-hold | stopped | completed | entered-in-error | unknown |
| category |
S | 1..1 | CodeableConcept | Classification of the procedure |
| performed[x] |
S | 0..1 | dateTime | GenomicStudy.analysis.date |
| Documentation for this format | ||||
| Path | Status | Usage | ValueSet | Version | Source |
| Procedure.extension:method-type.value[x] | Base | required | MII VS Genomic Analysis Method Type | 📦2027.0.0-ballot.1 | This IG |
Snapshot ViewView
| Name | Flags | Card. | Type | Description & Constraints Filter: | ||||
|---|---|---|---|---|---|---|---|---|
| Procedure |
0..* | MII_PR_MolGen_GenomicStudyAnalysis | An action that is being or was performed on a patient | |||||
| id |
Σ | 0..1 | id | Logical id of this artifact | ||||
| meta |
SΣ | 0..1 | Meta | Metadata about the resource | ||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
| versionId |
Σ | 0..1 | id | Version specific identifier | ||||
| lastUpdated |
Σ | 0..1 | instant | When the resource version last changed | ||||
| source |
Σ | 0..1 | uri | Identifies where the resource comes from | ||||
| profile |
SΣ | 0..* | canonical(StructureDefinition) | Profiles this resource claims to conform to | ||||
| security |
Σ | 0..* | Coding | Security Labels applied to this resource Binding: All Security Labels (extensible): Security Labels from the Healthcare Privacy and Security Classification System. | ||||
| tag |
Σ | 0..* | Coding | Tags applied to this resource Binding: CommonTags (example): Codes that represent various types of tags, commonly workflow-related; e.g. "Needs review by Dr. Jones". | ||||
| implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
| language |
0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
| |||||
| text |
0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements | |||||
| contained |
0..* | Resource | Contained, inline Resources | |||||
| Slices for extension |
S | 0..* | Extension | Extension Slice: Unordered, Open by value:url | ||||
| extension:method-type |
S | 0..* | (Complex) | Genomic Study Analysis Method Type URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-method-type | ||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..0 | Extension Slice: Unordered, Open by value:url | ||||||
| url |
1..1 | uri | "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-method-type" | |||||
| value[x] |
0..1 | CodeableConcept | cytogenetics | deletion-duplication-analysis | fish | sequence-analysis-of-the-entire-coding-region | ... (many) Binding: MII VS Genomic Analysis Method Type (required) | |||||
| extension:change-type |
S | 0..* | CodeableConcept | Untersuchte Variationstypen URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-change-type Binding: Genomic Study Change Type ValueSet (preferred) | ||||
| extension:genome-build |
S | 0..1 | CodeableConcept | Referenzgenom-Version URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genome-build Binding: LOINC Answer List LL1040-6 (extensible) | ||||
| extension:genomic-source-class |
0..1 | CodeableConcept | GenomicStudy.analysis.genomicSourceClass URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genomic-source-class Binding: LOINC Answer List LL378-1 (extensible) | |||||
| extension:title |
S | 0..1 | string | Bezeichnung der Analyse URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-title | ||||
| extension:focus |
S | 0..* | Reference(Resource) | Fokus der Analyse URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-focus | ||||
| extension:specimen |
S | 0..* | Reference(Specimen) | Untersuchte Probe URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen | ||||
| extension:metrics |
S | 0..1 | (Complex) | Qualitätsmetriken URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-metrics | ||||
| extension:regions |
S | 0..1 | (Complex) | Untersuchte genomische Regionen URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-regions | ||||
| extension:device |
S | 0..* | (Complex) | Verwendetes Analysegerät URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device | ||||
| extension:protocol-performed |
0..1 | Reference(Procedure | Task) | GenomicStudy.protocolPerformed URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-protocol-performed | |||||
| extension:input |
0..* | (Complex) | GenomicStudy.analysis.input URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input | |||||
| extension:output |
0..* | (Complex) | GenomicStudy.analysis.output URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output | |||||
| extension:qc |
S | 0..1 | (Complex) | MII EX MTB Antrag GenomicsStudyAnalysis Metrics URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-ex-mtb-genomic-study-analysis-qc | ||||
| modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored | ||||
| identifier |
SΣ | 0..* | Identifier | GenomicStudy.analysis.identifier | ||||
| instantiatesCanonical |
Σ | 0..* | canonical(PlanDefinition | ActivityDefinition) | GenomicStudy.analysis.instantiatesCanonical | ||||
| instantiatesUri |
Σ | 0..* | uri | GenomicStudy.analysis.instantiatesUri | ||||
| status |
?!SΣ | 1..1 | code | preparation | in-progress | not-done | on-hold | stopped | completed | entered-in-error | unknown Binding: EventStatus (required): A code specifying the state of the procedure. Required Pattern: completed | ||||
| category |
SΣ | 1..1 | CodeableConcept | Classification of the procedure Binding: ProcedureCategoryCodes(SNOMEDCT) (example): A code that classifies a procedure for searching, sorting and display purposes. | ||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
| coding |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following | ||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| system |
1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/observation-category | |||||
| version |
0..1 | string | Version of the system - if relevant | |||||
| code |
1..1 | code | Symbol in syntax defined by the system Fixed Value: laboratory | |||||
| display |
0..1 | string | Representation defined by the system | |||||
| userSelected |
0..1 | boolean | If this coding was chosen directly by the user | |||||
| text |
Σ | 0..1 | string | Plain text representation of the concept | ||||
| subject |
Σ | 1..1 | Reference(Patient | Group) | Who the procedure was performed on | ||||
| performed[x] |
SΣ | 0..1 | dateTime | GenomicStudy.analysis.date | ||||
| performer |
Σ | 0..* | BackboneElement | The people who performed the procedure | ||||
| id |
0..1 | string | Unique id for inter-element referencing | |||||
| extension |
0..* | Extension | Additional content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
| function |
Σ | 0..1 | CodeableConcept | GenomicStudy.analysis.performer.role Binding: ProcedurePerformerRoleCodes (example): A code that identifies the role of a performer of the procedure. | ||||
| actor |
Σ | 1..1 | Reference(Practitioner | PractitionerRole | Organization | Device) | GenomicStudy.analysis.performer.actor | ||||
| onBehalfOf |
0..1 | Reference(Organization) | Organization the device or practitioner was acting for | |||||
| note |
0..* | Annotation | GenomicStudy.analysis.note | |||||
| Documentation for this format | ||||||||
| Path | Status | Usage | ValueSet | Version | Source |
| Procedure.meta.security | Base | extensible | SecurityLabels | 📍4.0.1 | FHIR Std. |
| Procedure.meta.tag | Base | example | Common Tags | 📍4.0.1 | FHIR Std. |
| Procedure.language | Base | preferred | Common Languages | 📦4.0.1 | FHIR Std. |
| Procedure.extension:method-type.value[x] | Base | required | MII VS Genomic Analysis Method Type | 📦2027.0.0-ballot.1 | This IG |
| Procedure.status | Base | required | EventStatus | 📍4.0.1 | FHIR Std. |
| Procedure.category | Base | example | Procedure Category Codes (SNOMED CT) | 📦4.0.1 | FHIR Std. |
| Procedure.performer.function | Base | example | Procedure Performer Role Codes | 📦4.0.1 | FHIR Std. |
| Procedure.focalDevice.action | Base | preferred | Procedure Device Action Codes | 📦4.0.1 | FHIR Std. |
| Id | Grade | Path(s) | Description | Expression |
| dom-2 | error | Procedure | If the resource is contained in another resource, it SHALL NOT contain nested Resources |
contained.contained.empty()
|
| dom-3 | error | Procedure | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource |
contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
|
| dom-4 | error | Procedure | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated |
contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
|
| dom-5 | error | Procedure | If a resource is contained in another resource, it SHALL NOT have a security label |
contained.meta.security.empty()
|
| dom-6 | best practice | Procedure | A resource should have narrative for robust management |
text.`div`.exists()
|
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children |
hasValue() or (children().count() > id.count())
|
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both |
extension.exists() != value.exists()
|
Other representations of profile: CSV, Excel, Schematron
