MII IG Kerndatensatz-Modul Biobank
2027.0.0-ballot - Germany

This page is part of the MII IG Kerndatensatz-Modul Biobank (v2027.0.0-ballot: 2027 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. No current official version has been published yet. For a full list of available versions, see the Directory of published versions

: DNA Aliquotgruppe

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<Specimen xmlns="http://hl7.org/fhir">
  <id value="AliquotgruppeDNA"/>
  <meta>
    <profile
             value="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Specimen"/>
  </meta>
  <language value="de"/>
  <text>
    <status value="extensions"/>
    <div xml:lang="de" lang="de"><hr/><p><b>German</b></p><hr/><p class="res-header-id"><b>Generated Narrative: Specimen AliquotgruppeDNA</b></p><a name="de-AliquotgruppeDNA"> </a><a name="de-hcAliquotgruppeDNA"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-mii-pr-biobank-specimen.html">MII PR Biobank Specimen Bioprobe</a></p></div><p><b>MII EX Biobank Ebene</b>: <a href="CodeSystem-mii-cs-biobank-probenebene.html#mii-cs-biobank-probenebene-ALIQUOTGRUPPE">MII CS Biobank Probenebene: ALIQUOTGRUPPE</a> (Aliquotgruppe)</p><p><b>MII EX Biobank Anzahl Aliquots</b>: 2</p><p><b>identifier</b>: <code>https://biobank.uk-musterstadt.de/fhir/sid/proben</code>/12345-DNA-1</p><p><b>status</b>: Available</p><p><b>type</b>: <span title="Codes:{http://snomed.info/sct 258566005}, {https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs DNA}">Deoxyribonucleic acid specimen (specimen)</span></p><p><b>subject</b>: <a href="https://simplifier.net/resolve?scope=de.basisprofil.r4@1.6.0&amp;canonical=http://fhir.org/packages/de.basisprofil.r4/Patient/mii-exa-test-data-patient-1">Patient/mii-exa-test-data-patient-1</a></p><p><b>parent</b>: <a href="Specimen-AliquotBuffyCoat2.html">Specimen: extension = Aliquot (MII CS Biobank Probenebene#ALIQUOT); identifier = https://biobank.uk-musterstadt.de/fhir/sid/proben#12345-BC-2; status = unavailable; type = Buffy coat (specimen)</a></p><h3>Collections</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Collected[x]</b></td></tr><tr><td style="display: none">*</td><td>2018-06-07 15:54:00+0100</td></tr></table><blockquote><p><b>processing</b></p><p><b>MII EX Biobank Temperaturbedingungen</b>: -80--70 °C</p><p><b>Sample storage temperature</b>: <span title="Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs -60to-85}">between -60 and -85 degrees Celsius</span></p><p><b>procedure</b>: <span title="Codes:{http://snomed.info/sct 1186936003}">Storage of specimen (procedure)</span></p><p><b>time</b>: 2018-09-07 13:55:00+0100 --&gt; (ongoing)</p></blockquote><h3>Containers</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Type</b></td><td><b>Capacity</b></td><td><b>SpecimenQuantity</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://snomed.info/sct 83059008}">Tube, device (physical object)</span></td><td>0.5 ml<span style="background: LightGoldenRodYellow"> (Details: UCUM  codeml = 'ml')</span></td><td>0.05 ml<span style="background: LightGoldenRodYellow"> (Details: UCUM  codeml = 'ml')</span></td></tr></table><p><b>note</b>: </p><blockquote><div><p>DNA Aliquots gewonnen aus Buffy-Coat</p>
</div></blockquote></div>
  </text>
  <extension
             url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene">
    <valueCoding>
      <system
              value="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/CodeSystem/mii-cs-biobank-probenebene"/>
      <code value="ALIQUOTGRUPPE"/>
      <display value="Aliquotgruppe"/>
    </valueCoding>
  </extension>
  <extension
             url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-anzahl-aliquots">
    <valueInteger value="2"/>
  </extension>
  <identifier>
    <system value="https://biobank.uk-musterstadt.de/fhir/sid/proben"/>
    <value value="12345-DNA-1"/>
  </identifier>
  <status value="available"/>
  <type>
    <coding>
      <system value="http://snomed.info/sct"/>
      <code value="258566005"/>
      <display value="Deoxyribonucleic acid specimen (specimen)"/>
    </coding>
    <coding>
      <system
              value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs"/>
      <code value="DNA"/>
      <display value="DNA"/>
    </coding>
  </type>
  <subject>
    <reference value="Patient/mii-exa-test-data-patient-1"/>
  </subject>
  <parent>🔗 
    <reference value="Specimen/AliquotBuffyCoat2"/>
  </parent>
  <collection>
    <collectedDateTime value="2018-06-07T15:54:00+01:00"/>
  </collection>
  <processing>
    <extension
               url="https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen">
      <valueRange>
        <low>
          <value value="-80"/>
          <unit value="°C"/>
          <system value="http://unitsofmeasure.org"/>
          <code value="Cel"/>
        </low>
        <high>
          <value value="-70"/>
          <unit value="°C"/>
          <system value="http://unitsofmeasure.org"/>
          <code value="Cel"/>
        </high>
      </valueRange>
    </extension>
    <extension
               url="https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-storage-temperature-extension">
      <valueCodeableConcept>
        <coding>
          <system
                  value="https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs"/>
          <code value="-60to-85"/>
          <display value="between -60 and -85 degrees Celsius"/>
        </coding>
      </valueCodeableConcept>
    </extension>
    <procedure>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="1186936003"/>
        <display value="Storage of specimen (procedure)"/>
      </coding>
    </procedure>
    <timePeriod>
      <start value="2018-09-07T13:55:00+01:00"/>
    </timePeriod>
  </processing>
  <container>
    <type>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="83059008"/>
        <display value="Tube, device (physical object)"/>
      </coding>
    </type>
    <capacity>
      <value value="0.5"/>
      <unit value="ml"/>
      <system value="http://unitsofmeasure.org"/>
      <code value="ml"/>
    </capacity>
    <specimenQuantity>
      <value value="0.05"/>
      <unit value="ml"/>
      <system value="http://unitsofmeasure.org"/>
      <code value="ml"/>
    </specimenQuantity>
  </container>
  <note>
    <text value="DNA Aliquots gewonnen aus Buffy-Coat"/>
  </note>
</Specimen>