MII IG Kerndatensatz-Modul Biobank
2027.0.0-ballot - Germany

This page is part of the MII IG Kerndatensatz-Modul Biobank (v2027.0.0-ballot: 2027 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. No current official version has been published yet. For a full list of available versions, see the Directory of published versions

: Musterprobe Gewebe

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{
  "resourceType" : "Specimen",
  "id" : "MusterprobeGewebe",
  "meta" : {
    "profile" : [
      🔗 "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Specimen"
    ]
  },
  "language" : "de",
  "text" : {
    "status" : "extensions",
    "div" : "<div xml:lang=\"de\" lang=\"de\"><hr/><p><b>German</b></p><hr/><p class=\"res-header-id\"><b>Generated Narrative: Specimen MusterprobeGewebe</b></p><a name=\"de-MusterprobeGewebe\"> </a><a name=\"de-hcMusterprobeGewebe\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-mii-pr-biobank-specimen.html\">MII PR Biobank Specimen Bioprobe</a></p></div><p><b>MII EX Biobank Verwaltende Organisation</b>: <a href=\"Organization-Mustersammlung.html\">Organization Mustersammlung</a></p><p><b>MII EX Biobank Diagnose</b>: <a href=\"https://simplifier.net/resolve?scope=de.basisprofil.r4@1.6.0&amp;canonical=http://fhir.org/packages/de.basisprofil.r4/Diagnose/mii-exa-test-data-patient-1-diagnose-1\">Diagnose/mii-exa-test-data-patient-1-diagnose-1</a></p><p><b>MII EX Biobank Ebene</b>: <a href=\"CodeSystem-mii-cs-biobank-probenebene.html#mii-cs-biobank-probenebene-ALIQUOTGRUPPE\">MII CS Biobank Probenebene: ALIQUOTGRUPPE</a> (Aliquotgruppe)</p><p><b>identifier</b>: <code>https://biobank.uk-musterstadt.de/fhir/sid/proben</code>/6789</p><p><b>status</b>: Available</p><p><b>type</b>: <span title=\"Codes:{http://snomed.info/sct 16214371000119104}, {https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs TissueFreshFrozen}\">Specimen from lung obtained by needle biopsy (specimen)</span></p><p><b>subject</b>: <a href=\"https://simplifier.net/resolve?scope=de.basisprofil.r4@1.6.0&amp;canonical=http://fhir.org/packages/de.basisprofil.r4/Patient/mii-exa-test-data-patient-1\">Patient/mii-exa-test-data-patient-1</a></p><p><b>receivedTime</b>: 2018-06-08 15:43:00+0100</p><p><b>request</b>: <a href=\"ServiceRequest-GewebeBiopsie.html\">ServiceRequest Needle biopsy of lung (procedure)</a></p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Extension</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td><td><b>BodySite</b></td><td><b>FastingStatus[x]</b></td></tr><tr><td style=\"display: none\">*</td><td/><td>2018-06-08 15:34:00+0100</td><td><span title=\"Codes:{http://snomed.info/sct 274319000}\">Needle biopsy of lung (procedure)</span></td><td><span title=\"Codes:{http://snomed.info/sct 14559000}\">Structure of apex of left lung (body structure)</span></td><td>No display for Duration  (value: 4; system: http://unitsofmeasure.org; code: h)</td></tr></table><blockquote><p><b>processing</b></p><p><b>MII EX Biobank Temperaturbedingungen</b>: 15-25 °C</p><p><b>Sample storage temperature</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs RT}\">Room temperature</span></p><p><b>procedure</b>: <span title=\"Codes:{http://snomed.info/sct 1186936003}\">Storage of specimen (procedure)</span></p><p><b>time</b>: 2018-06-08 15:34:00+0100 --&gt; 2018-06-08 15:46:00+0100</p></blockquote><blockquote><p><b>processing</b></p><p><b>MII EX Biobank Temperaturbedingungen</b>: -85--60 °C</p><p><b>Sample storage temperature</b>: <span title=\"Codes:{https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs -60to-85}\">between -60 and -85 degrees Celsius</span></p><p><b>procedure</b>: <span title=\"Codes:{http://snomed.info/sct 1186936003}, {http://snomed.info/sct 27872000}\">Storage of specimen (procedure)</span></p><p><b>time</b>: 2018-06-08 15:49:00+0100 --&gt; (ongoing)</p></blockquote><h3>Containers</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Type</b></td><td><b>SpecimenQuantity</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://snomed.info/sct 83059008}\">Tube, device (physical object)</span></td><td>5 g<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM  codeg = 'g')</span></td></tr></table></div>"
  },
  "extension" : [
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      "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/VerwaltendeOrganisation",
      "valueReference" : {
        🔗 "reference" : "Organization/Mustersammlung"
      }
    },
    {
      "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Diagnose",
      "valueReference" : {
        "reference" : "Diagnose/mii-exa-test-data-patient-1-diagnose-1"
      }
    },
    {
      "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene",
      "valueCoding" : {
        "system" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/CodeSystem/mii-cs-biobank-probenebene",
        "code" : "ALIQUOTGRUPPE",
        "display" : "Aliquotgruppe"
      }
    }
  ],
  "identifier" : [
    {
      "system" : "https://biobank.uk-musterstadt.de/fhir/sid/proben",
      "value" : "6789"
    }
  ],
  "status" : "available",
  "type" : {
    "coding" : [
      {
        "system" : "http://snomed.info/sct",
        "code" : "16214371000119104",
        "display" : "Specimen from lung obtained by needle biopsy (specimen)"
      },
      {
        "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-detailed-samply-type-cs",
        "code" : "TissueFreshFrozen",
        "display" : "Tissue (fresh frozen)"
      }
    ]
  },
  "subject" : {
    "reference" : "Patient/mii-exa-test-data-patient-1"
  },
  "receivedTime" : "2018-06-08T15:43:00+01:00",
  "request" : [
    {
      🔗 "reference" : "ServiceRequest/GewebeBiopsie"
    }
  ],
  "collection" : {
    "extension" : [
      {
        "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung",
        "valueDateTime" : "2018-06-08T15:32:00+01:00"
      }
    ],
    "collectedDateTime" : "2018-06-08T15:34:00+01:00",
    "method" : {
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          "system" : "http://snomed.info/sct",
          "code" : "274319000",
          "display" : "Needle biopsy of lung (procedure)"
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    },
    "bodySite" : {
      "coding" : [
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          "system" : "http://snomed.info/sct",
          "code" : "14559000",
          "display" : "Structure of apex of left lung (body structure)"
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      ]
    },
    "fastingStatusDuration" : {
      "value" : 4,
      "system" : "http://unitsofmeasure.org",
      "code" : "h"
    }
  },
  "processing" : [
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      "extension" : [
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          "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen",
          "valueRange" : {
            "low" : {
              "value" : 15,
              "unit" : "°C",
              "system" : "http://unitsofmeasure.org",
              "code" : "Cel"
            },
            "high" : {
              "value" : 25,
              "unit" : "°C",
              "system" : "http://unitsofmeasure.org",
              "code" : "Cel"
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          }
        },
        {
          "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-storage-temperature-extension",
          "valueCodeableConcept" : {
            "coding" : [
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                "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs",
                "code" : "RT",
                "display" : "Room temperature"
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            ]
          }
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      ],
      "procedure" : {
        "coding" : [
          {
            "system" : "http://snomed.info/sct",
            "code" : "1186936003",
            "display" : "Storage of specimen (procedure)"
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      "timePeriod" : {
        "start" : "2018-06-08T15:34:00+01:00",
        "end" : "2018-06-08T15:46:00+01:00"
      }
    },
    {
      "extension" : [
        {
          "url" : "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen",
          "valueRange" : {
            "low" : {
              "value" : -85,
              "unit" : "°C",
              "system" : "http://unitsofmeasure.org",
              "code" : "Cel"
            },
            "high" : {
              "value" : -60,
              "unit" : "°C",
              "system" : "http://unitsofmeasure.org",
              "code" : "Cel"
            }
          }
        },
        {
          "url" : "https://fhir.bbmri-eric.eu/StructureDefinition/miabis-sample-storage-temperature-extension",
          "valueCodeableConcept" : {
            "coding" : [
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                "system" : "https://fhir.bbmri-eric.eu/CodeSystem/miabis-storage-temperature-cs",
                "code" : "-60to-85",
                "display" : "between -60 and -85 degrees Celsius"
              }
            ]
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      "procedure" : {
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            "display" : "Storage of specimen (procedure)"
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          {
            "system" : "http://snomed.info/sct",
            "code" : "27872000",
            "display" : "Specimen freezing (procedure)"
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        ]
      },
      "timePeriod" : {
        "start" : "2018-06-08T15:49:00+01:00"
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  "container" : [
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      "type" : {
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            "system" : "http://snomed.info/sct",
            "code" : "83059008",
            "display" : "Tube, device (physical object)"
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        ]
      },
      "specimenQuantity" : {
        "value" : 5,
        "unit" : "g",
        "system" : "http://unitsofmeasure.org",
        "code" : "g"
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}