MII IG Kerndatensatz-Modul Molekulares Tumorboard
2027.0.0-ballot.1 -
Germany
This page is part of the MII Implementation Guide Molecular Tumor Board (v2027.0.0-ballot.1: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions
| Offizielle URL: https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-insituhybridization | Version: 2027.0.0-ballot.1 | |||
| Active Stand: 2026-09-15 | Maschinenlesbarer Name: MII_PR_MTB_Biomarker_InSituHybridization | |||
Molekularer Biomarker - In Situ Hybridization Profil. Unterstützt FISH, CISH und SISH Methoden.
Dieses Profil beschreibt eine generische Darstellung von Ergebnissen, die aus molekularpathologischen In-Situ-Hybridisierungsuntersuchungen auf Gewebsschnitten basiert.
Das Profil unterstützt verschiedene ISH-Methoden:
Analog zur IHC-Modellierung wurde folgende Struktur gewählt:
code: Slicing mit spezifisch und generisch
49683-6 ERBB2 gene copy number/Chromosome 17 copy number in Tissue by FISH)51864006 Nucleic acid hybridization, function (observable entity) wenn kein spezifischer Code verfügbar istmethod (Pflichtfeld): Angabe der ISH-Methode aus dem ValueSet MII_VS_MTB_ISH_Method:
1303773004 - Fluorescence in situ hybridization technique (FISH)787997001 - Chromogenic in situ hybridization (CISH)787998006 - Silver in situ hybridization (SISH)value[x]: Unterstützt verschiedene Ergebnistypen:
valueRatio - für Ratio-Messungen (z.B. HER2/CEP17)valueQuantity - für einzelne SignalzählungenvalueCodeableConcept - für kategorische Ergebnisse (positiv/negativ)Für detaillierte FISH-Auswertungen werden folgende Komponenten unterstützt:
| Komponente | LOINC | Beschreibung |
|---|---|---|
target-signals |
74860-8 | Target-Sonden Signale pro Zellkern (z.B. ERBB2) |
reference-signals |
74861-6 | Referenz-Sonden Signale pro Zellkern (z.B. CEP17) |
cells-counted |
62361-1 | Anzahl der ausgewerteten Zellen |
gene-studied |
48018-6 | Untersuchtes Gen (HGNC-kodiert) |
Diese Struktur basiert auf dem LOINC Panel für HER2 FISH (74885-5 ERBB2 gene (HER2) duplication associated observations panel - Tissue by FISH).
Die In-Situ-Hybridisierung wird wie immunhistochemische Ergebnisse vom Molekular-Pathologie-Report über DiagnosticReport.result verlinkt. Sie kann ihrerseits von diagnostischen oder therapeutischen Implikationen referenziert werden.
Für häufige ISH-Untersuchungen existieren spezialisierte Kindprofile:
Suchparameter
Folgende Suchparameter sind für das Modul Onkologie relevant, auch in Kombination:
Der Suchparameter "_id" MUSS unterstützt werden:
Beispiele:
GET [base]/Observation?_id=12345
Anwendungshinweise: Weitere Informationen zur Suche nach "_id" finden sich in der FHIR-Basisspezifikation - Abschnitt "Parameters for all resources".
Der Suchparameter "code" MUSS unterstützt werden:
Beispiele:
GET [base]/Observation?code=http://snomed.info/sct|51864006
Anwendungshinweise: Weitere Informationen zur Suche nach "code" finden sich in der FHIR-Basisspezifikation - Abschnitt "token".
Der Suchparameter "method" MUSS unterstützt werden:
Beispiele:
GET [base]/Observation?method=http://snomed.info/sct|1303773004
Anwendungshinweise: Suche nach der verwendeten ISH-Methode (FISH, CISH, SISH).
Der Suchparameter "focus" MUSS unterstützt werden:
Beispiele:
GET [base]/Observation?focus=Condition/example-mii-mtb-diagnose
Anwendungshinweise: Weitere Informationen zur Suche nach "focus" finden sich in der FHIR-Basisspezifikation - Abschnitt "reference".
Der Suchparameter "interpretation" MUSS unterstützt werden:
Beispiele:
GET [base]/Observation?interpretation=http://hl7.org/fhir/uv/genomics-reporting/ValueSet/high-low-codes-vs|high
Anwendungshinweise: Weitere Informationen zur Suche nach "interpretation" finden sich in der FHIR-Basisspezifikation - Abschnitt "token".
Beispiele
Usages:
You can also check for usages in the FHIR IG Statistics
Beschreibung von Profilen, Differentials, Snapshots und deren Repräsentationen.
| Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
|---|---|---|---|---|
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C | 0..* | MII_PR_MTB_Molekularer_Biomarker | Measurements and simple assertions Constraints: obs-6, obs-7, mii-mtb-ish-1 |
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SΣ | 0..1 | Meta | Metadata about the resource |
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SΣ | 0..* | canonical(StructureDefinition) | Profiles this resource claims to conform to |
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?!Σ | 0..1 | uri | A set of rules under which this content was created |
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?! | 0..* | Extension | Extensions that cannot be ignored |
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SΣ | 0..1 | Identifier | Identifier zur Abgrenzung anderer gleichartiger Untersuchungen |
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?!Σ | 1..1 | code | registered | preliminary | final | amended + Binding: ObservationStatus (required): Codes providing the status of an observation. |
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S | 2..* | CodeableConcept | Kategorie Slice: Unordered, Open by value:coding Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. |
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1..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |
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Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/observation-category | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: laboratory | |
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0..1 | string | Representation defined by the system | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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1..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |
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Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: biomarker-category | |
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0..1 | string | Representation defined by the system | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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0..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |
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Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/v2-0074 | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: GE | |
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0..1 | string | Representation defined by the system | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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SΣ | 1..1 | CodeableConcept | Code für In Situ Hybridization Untersuchung Binding: MII VS Molekulare Biomarker (extensible) |
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SΣ | 1..* | Coding | Code defined by a terminology system Slice: Unordered, Open by pattern:$this |
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SΣ | 1..1 | Coding | Generischer ISH Code Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://snomed.info/sct | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: 51864006 | |
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1..1 | string | Representation defined by the system Fixed Value: Nucleic acid hybridization, function (observable entity) | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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SΣ | 0..1 | Reference(Patient | Group) | Patient |
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SΣ | 0..* | Reference(MII PR Onkologie Diagnose Primärtumor) | What the observation is about, when it is not about the subject of record |
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SΣ | 0..1 | Reference(Encounter) | Kontakt |
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SΣ | 0..1 | Zeitpunkt der Beobachtung | |
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dateTime | |||
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Period | |||
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Timing | |||
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instant | |||
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SΣ | 0..1 | instant | Freigabedatum |
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SΣC | 0..1 | Actual result Slice: Unordered, Open by type:$this | |
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Quantity | |||
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CodeableConcept | |||
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string | |||
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boolean | |||
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integer | |||
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Range | |||
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Ratio | |||
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SampledData | |||
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time | |||
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dateTime | |||
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Period | |||
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SΣC | 0..1 | Quantity | Quantitatives Ergebnis (z.B. Signalanzahl) |
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SΣC | 0..1 | Ratio | Ratio-Ergebnis (z.B. HER2/CEP17) |
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SΣC | 0..1 | CodeableConcept | Kategorisches Ergebnis (z.B. positiv/negativ) |
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S | 0..* | CodeableConcept | Interpretation Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. |
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S | 1..1 | CodeableConcept | FISH | CISH | SISH Binding: MII VS MTB ISH Method (extensible) |
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SΣ | 0..* | Reference(DocumentReference | ImagingStudy | Media | QuestionnaireResponse | Observation | MolecularSequence) | Abgeleitet von Slice: Unordered, Open by profile:resolve() |
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Σ | 0..* | Reference(MII PR MolGen Variante) | Variant the biomarker is derived from |
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Σ | 0..* | Reference(Genotype) | Genotype the biomarker is derived from |
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Σ | 0..* | Reference(Haplotype) | Haplotype the biomarker is derived from |
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SΣ | 0..* | BackboneElement | Komponenten Slice: Unordered, Open by value:code |
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Content/Rules for all slices | |||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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Σ | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example): Codes identifying names of simple observations. |
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SΣ | 0..* | BackboneElement | |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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Σ | 1..1 | CodeableConcept | 48018-6 Binding: LOINCCodes (example): Codes identifying names of simple observations. Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://loinc.org | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: 48018-6 | |
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0..1 | string | Representation defined by the system | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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0..1 | string | Plain text representation of the concept | |
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Σ | 1..1 | CodeableConcept | The HGNC gene symbol is to be used as display text and the HGNC gene ID used as the code. If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used. Binding: HUGO Gene Nomenclature Committee Gene Names (HGNC) (extensible) |
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SΣ | 0..* | BackboneElement | Biomarker-Kategorie |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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Σ | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example): Codes identifying names of simple observations. Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: biomarker-category | |
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0..1 | string | Representation defined by the system | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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0..1 | string | Plain text representation of the concept | |
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Σ | 1..1 | CodeableConcept | cell receptor | antigen | protein | immune stain Binding: Molecular Biomarker Categories (example) |
Documentation for this format | ||||
| Path | Status | Usage | ValueSet | Version | Source |
| Observation.status | Base | required | ObservationStatus | 📍4.0.1 | FHIR Std. |
| Observation.category | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:labCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:mbCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:geCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.code | Base | extensible | MII VS Molekulare Biomarker | 📦2027.0.0-ballot.1 | This IG |
| Observation.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Observation.method | Base | extensible | MII VS MTB ISH Method | 📦2027.0.0-ballot.1 | This IG |
| Observation.component.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.value[x] | Base | extensible | HUGO Gene Nomenclature Committee Gene Names (HGNC) | 📦3.0.0 | Genomics Reporting Implementation Guide v3.0 |
| Observation.component:biomarker-category.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:biomarker-category.value[x] | Base | example | Molecular Biomarker Categories | 📦3.0.0 | Genomics Reporting Implementation Guide v3.0 |
| Id | Grade | Path(s) | Description | Expression |
| dom-2 | error | Observation | If the resource is contained in another resource, it SHALL NOT contain nested Resources |
contained.contained.empty()
|
| dom-3 | error | Observation | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource |
contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
|
| dom-4 | error | Observation | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated |
contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
|
| dom-5 | error | Observation | If a resource is contained in another resource, it SHALL NOT have a security label |
contained.meta.security.empty()
|
| dom-6 | best practice | Observation | A resource should have narrative for robust management |
text.`div`.exists()
|
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children |
hasValue() or (children().count() > id.count())
|
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both |
extension.exists() != value.exists()
|
| mii-mtb-ish-1 | error | Observation | Entweder muss ein spezifischer Code oder gene-studied angegeben werden (Either a specific code or gene-studied must be provided) |
code.coding.where(system != 'http://snomed.info/sct' or code != '51864006').exists() or component.where(code.coding.where(system = 'http://loinc.org' and code = '48018-6').exists()).exists()
|
| obs-6 | error | Observation | dataAbsentReason SHALL only be present if Observation.value[x] is not present |
dataAbsentReason.empty() or value.empty()
|
| obs-7 | error | Observation | If Observation.code is the same as an Observation.component.code then the value element associated with the code SHALL NOT be present |
value.empty() or component.code.where(coding.intersect(%resource.code.coding).exists()).empty()
|
Diese Struktur ist abgeleitet von MII_PR_MTB_Molekularer_Biomarker
| Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
|---|---|---|---|---|
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C | 0..* | MII_PR_MTB_Molekularer_Biomarker | Measurements and simple assertions Constraints: mii-mtb-ish-1 |
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S | 0..1 | Identifier | Identifier zur Abgrenzung anderer gleichartiger Untersuchungen |
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1..1 | CodeableConcept | Code für In Situ Hybridization Untersuchung | |
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S | 1..* | Coding | Code defined by a terminology system Slice: Unordered, Open by pattern:$this |
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S | 1..1 | Coding | Generischer ISH Code Required Pattern: At least the following |
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1..1 | uri | Identity of the terminology system Fixed Value: http://snomed.info/sct | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: 51864006 | |
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1..1 | string | Representation defined by the system Fixed Value: Nucleic acid hybridization, function (observable entity) | |
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0..* | Reference(MII PR Onkologie Diagnose Primärtumor) | What the observation is about, when it is not about the subject of record | |
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S | 0..1 | Quantity, CodeableConcept, string, boolean, integer, Range, Ratio, SampledData, time, dateTime, Period | Actual result Slice: Unordered, Open by type:$this |
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S | 0..1 | Quantity | Quantitatives Ergebnis (z.B. Signalanzahl) |
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S | 0..1 | Ratio | Ratio-Ergebnis (z.B. HER2/CEP17) |
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S | 0..1 | CodeableConcept | Kategorisches Ergebnis (z.B. positiv/negativ) |
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S | 0..* | CodeableConcept | Interpretation |
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S | 1..1 | CodeableConcept | FISH | CISH | SISH Binding: MII VS MTB ISH Method (extensible) |
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Content/Rules for all slices | |||
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0..* | BackboneElement | ||
Documentation for this format | ||||
| Path | Status | Usage | ValueSet | Version | Source |
| Observation.method | Base | extensible | MII VS MTB ISH Method | 📦2027.0.0-ballot.1 | This IG |
| Id | Grade | Path(s) | Description | Expression |
| mii-mtb-ish-1 | error | Observation | Entweder muss ein spezifischer Code oder gene-studied angegeben werden (Either a specific code or gene-studied must be provided) |
code.coding.where(system != 'http://snomed.info/sct' or code != '51864006').exists() or component.where(code.coding.where(system = 'http://loinc.org' and code = '48018-6').exists()).exists()
|
| Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() | ||||
|---|---|---|---|---|---|---|---|---|
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C | 0..* | MII_PR_MTB_Molekularer_Biomarker | Measurements and simple assertions Constraints: obs-6, obs-7, mii-mtb-ish-1 | ||||
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Σ | 0..1 | id | Logical id of this artifact | ||||
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SΣ | 0..1 | Meta | Metadata about the resource | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
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Σ | 0..1 | id | Version specific identifier | ||||
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Σ | 0..1 | instant | When the resource version last changed | ||||
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Σ | 0..1 | uri | Identifies where the resource comes from | ||||
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SΣ | 0..* | canonical(StructureDefinition) | Profiles this resource claims to conform to | ||||
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Σ | 0..* | Coding | Security Labels applied to this resource Binding: All Security Labels (extensible): Security Labels from the Healthcare Privacy and Security Classification System. | ||||
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Σ | 0..* | Coding | Tags applied to this resource Binding: CommonTags (example): Codes that represent various types of tags, commonly workflow-related; e.g. "Needs review by Dr. Jones". | ||||
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?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
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0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
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0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements | |||||
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0..* | Resource | Contained, inline Resources | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?! | 0..* | Extension | Extensions that cannot be ignored | ||||
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SΣ | 0..1 | Identifier | Identifier zur Abgrenzung anderer gleichartiger Untersuchungen | ||||
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Σ | 0..* | Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest) | Fulfills plan, proposal or order | ||||
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Σ | 0..* | Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy) | Part of referenced event | ||||
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?!Σ | 1..1 | code | registered | preliminary | final | amended + Binding: ObservationStatus (required): Codes providing the status of an observation. | ||||
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S | 2..* | CodeableConcept | Kategorie Slice: Unordered, Open by value:coding Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | ||||
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1..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/observation-category | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: laboratory | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | string | Plain text representation of the concept | ||||
![]() ![]() ![]() |
1..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |||||
![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: biomarker-category | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | string | Plain text representation of the concept | ||||
![]() ![]() ![]() |
0..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |||||
![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/v2-0074 | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: GE | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | string | Plain text representation of the concept | ||||
![]() ![]() |
SΣ | 1..1 | CodeableConcept | Code für In Situ Hybridization Untersuchung Binding: MII VS Molekulare Biomarker (extensible) | ||||
![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() |
SΣ | 1..* | Coding | Code defined by a terminology system Slice: Unordered, Open by pattern:$this | ||||
![]() ![]() ![]() ![]() |
SΣ | 1..1 | Coding | Generischer ISH Code Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://snomed.info/sct | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: 51864006 | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Nucleic acid hybridization, function (observable entity) | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() |
Σ | 0..1 | string | Plain text representation of the concept | ||||
![]() ![]() |
SΣ | 0..1 | Reference(Patient | Group) | Patient | ||||
![]() ![]() |
SΣ | 0..* | Reference(MII PR Onkologie Diagnose Primärtumor) | What the observation is about, when it is not about the subject of record | ||||
![]() ![]() |
SΣ | 0..1 | Reference(Encounter) | Kontakt | ||||
![]() ![]() |
SΣ | 0..1 | Zeitpunkt der Beobachtung | |||||
![]() ![]() ![]() |
dateTime | |||||||
![]() ![]() ![]() |
Period | |||||||
![]() ![]() ![]() |
Timing | |||||||
![]() ![]() ![]() |
instant | |||||||
![]() ![]() |
SΣ | 0..1 | instant | Freigabedatum | ||||
![]() ![]() |
Σ | 0..* | Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson) | Who is responsible for the observation | ||||
![]() ![]() |
SΣC | 0..1 | Actual result Slice: Unordered, Open by type:$this | |||||
![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() |
CodeableConcept | |||||||
![]() ![]() ![]() |
string | |||||||
![]() ![]() ![]() |
boolean | |||||||
![]() ![]() ![]() |
integer | |||||||
![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() |
Ratio | |||||||
![]() ![]() ![]() |
SampledData | |||||||
![]() ![]() ![]() |
time | |||||||
![]() ![]() ![]() |
dateTime | |||||||
![]() ![]() ![]() |
Period | |||||||
![]() ![]() ![]() |
SΣC | 0..1 | Quantity | Quantitatives Ergebnis (z.B. Signalanzahl) | ||||
![]() ![]() ![]() |
SΣC | 0..1 | Ratio | Ratio-Ergebnis (z.B. HER2/CEP17) | ||||
![]() ![]() ![]() |
SΣC | 0..1 | CodeableConcept | Kategorisches Ergebnis (z.B. positiv/negativ) | ||||
![]() ![]() |
C | 0..1 | CodeableConcept | Why the result is missing Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing. | ||||
![]() ![]() |
S | 0..* | CodeableConcept | Interpretation Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. | ||||
![]() ![]() |
0..* | Annotation | Comments about the observation | |||||
![]() ![]() |
0..1 | CodeableConcept | Observed body part Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality. | |||||
![]() ![]() |
S | 1..1 | CodeableConcept | FISH | CISH | SISH Binding: MII VS MTB ISH Method (extensible) | ||||
![]() ![]() |
0..1 | Reference(Specimen) | Specimen used for this observation | |||||
![]() ![]() |
0..1 | Reference(Device | DeviceMetric) | (Measurement) Device | |||||
![]() ![]() |
C | 0..* | BackboneElement | Provides guide for interpretation Constraints: obs-3 | ||||
![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() |
C | 0..1 | SimpleQuantity | Low Range, if relevant | ||||
![]() ![]() ![]() |
C | 0..1 | SimpleQuantity | High Range, if relevant | ||||
![]() ![]() ![]() |
0..1 | CodeableConcept | Reference range qualifier Binding: ObservationReferenceRangeMeaningCodes (preferred): Code for the meaning of a reference range. | |||||
![]() ![]() ![]() |
0..* | CodeableConcept | Reference range population Binding: ObservationReferenceRangeAppliesToCodes (example): Codes identifying the population the reference range applies to. | |||||
![]() ![]() ![]() |
0..1 | Range | Applicable age range, if relevant | |||||
![]() ![]() ![]() |
0..1 | string | Text based reference range in an observation | |||||
![]() ![]() |
Σ | 0..* | Reference(Observation | QuestionnaireResponse | MolecularSequence) | Related resource that belongs to the Observation group | ||||
![]() ![]() |
SΣ | 0..* | Reference(DocumentReference | ImagingStudy | Media | QuestionnaireResponse | Observation | MolecularSequence) | Abgeleitet von Slice: Unordered, Open by profile:resolve() | ||||
![]() ![]() ![]() |
Σ | 0..* | Reference(MII PR MolGen Variante) | Variant the biomarker is derived from | ||||
![]() ![]() ![]() |
Σ | 0..* | Reference(Genotype) | Genotype the biomarker is derived from | ||||
![]() ![]() ![]() |
Σ | 0..* | Reference(Haplotype) | Haplotype the biomarker is derived from | ||||
![]() ![]() |
SΣ | 0..* | BackboneElement | Komponenten Slice: Unordered, Open by value:code | ||||
![]() ![]() ![]() |
Content/Rules for all slices | |||||||
![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example): Codes identifying names of simple observations. | ||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | Actual component result | |||||
![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() |
CodeableConcept | |||||||
![]() ![]() ![]() ![]() ![]() |
string | |||||||
![]() ![]() ![]() ![]() ![]() |
boolean | |||||||
![]() ![]() ![]() ![]() ![]() |
integer | |||||||
![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() |
Ratio | |||||||
![]() ![]() ![]() ![]() ![]() |
SampledData | |||||||
![]() ![]() ![]() ![]() ![]() |
time | |||||||
![]() ![]() ![]() ![]() ![]() |
dateTime | |||||||
![]() ![]() ![]() ![]() ![]() |
Period | |||||||
![]() ![]() ![]() ![]() |
C | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing. | ||||
![]() ![]() ![]() ![]() |
0..* | CodeableConcept | High, low, normal, etc. Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. | |||||
![]() ![]() ![]() ![]() |
0..* | See referenceRange (Observation) | Provides guide for interpretation of component result | |||||
![]() ![]() ![]() |
SΣ | 0..* | BackboneElement | |||||
![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | 48018-6 Binding: LOINCCodes (example): Codes identifying names of simple observations. Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://loinc.org | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: 48018-6 | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | The HGNC gene symbol is to be used as display text and the HGNC gene ID used as the code. If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used. Binding: HUGO Gene Nomenclature Committee Gene Names (HGNC) (extensible) | ||||
![]() ![]() ![]() ![]() |
C | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing. | ||||
![]() ![]() ![]() ![]() |
0..* | CodeableConcept | High, low, normal, etc. Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. | |||||
![]() ![]() ![]() ![]() |
0..* | See referenceRange (Observation) | Provides guide for interpretation of component result | |||||
![]() ![]() ![]() |
SΣ | 0..* | BackboneElement | Biomarker-Kategorie | ||||
![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example): Codes identifying names of simple observations. Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: biomarker-category | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | cell receptor | antigen | protein | immune stain Binding: Molecular Biomarker Categories (example) | ||||
![]() ![]() ![]() ![]() |
C | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing. | ||||
![]() ![]() ![]() ![]() |
0..* | CodeableConcept | High, low, normal, etc. Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. | |||||
![]() ![]() ![]() ![]() |
0..* | See referenceRange (Observation) | Provides guide for interpretation of component result | |||||
Documentation for this format | ||||||||
| Path | Status | Usage | ValueSet | Version | Source |
| Observation.meta.security | Base | extensible | SecurityLabels | 📍4.0.1 | FHIR Std. |
| Observation.meta.tag | Base | example | Common Tags | 📍4.0.1 | FHIR Std. |
| Observation.language | Base | preferred | Common Languages | 📦4.0.1 | FHIR Std. |
| Observation.status | Base | required | ObservationStatus | 📍4.0.1 | FHIR Std. |
| Observation.category | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:labCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:mbCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:geCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.code | Base | extensible | MII VS Molekulare Biomarker | 📦2027.0.0-ballot.1 | This IG |
| Observation.dataAbsentReason | Base | extensible | DataAbsentReason | 📦4.0.1 | FHIR Std. |
| Observation.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Observation.bodySite | Base | example | SNOMED CT Body Structures | 📦4.0.1 | FHIR Std. |
| Observation.method | Base | extensible | MII VS MTB ISH Method | 📦2027.0.0-ballot.1 | This IG |
| Observation.referenceRange.type | Base | preferred | Observation Reference Range Meaning Codes | 📦4.0.1 | FHIR Std. |
| Observation.referenceRange.appliesTo | Base | example | Observation Reference Range Applies To Codes | 📦4.0.1 | FHIR Std. |
| Observation.component.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component.dataAbsentReason | Base | extensible | DataAbsentReason | 📦4.0.1 | FHIR Std. |
| Observation.component.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.value[x] | Base | extensible | HUGO Gene Nomenclature Committee Gene Names (HGNC) | 📦3.0.0 | Genomics Reporting Implementation Guide v3.0 |
| Observation.component:gene-studied.dataAbsentReason | Base | extensible | DataAbsentReason | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:biomarker-category.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:biomarker-category.value[x] | Base | example | Molecular Biomarker Categories | 📦3.0.0 | Genomics Reporting Implementation Guide v3.0 |
| Observation.component:biomarker-category.dataAbsentReason | Base | extensible | DataAbsentReason | 📦4.0.1 | FHIR Std. |
| Observation.component:biomarker-category.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Id | Grade | Path(s) | Description | Expression |
| dom-2 | error | Observation | If the resource is contained in another resource, it SHALL NOT contain nested Resources |
contained.contained.empty()
|
| dom-3 | error | Observation | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource |
contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
|
| dom-4 | error | Observation | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated |
contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
|
| dom-5 | error | Observation | If a resource is contained in another resource, it SHALL NOT have a security label |
contained.meta.security.empty()
|
| dom-6 | best practice | Observation | A resource should have narrative for robust management |
text.`div`.exists()
|
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children |
hasValue() or (children().count() > id.count())
|
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both |
extension.exists() != value.exists()
|
| mii-mtb-ish-1 | error | Observation | Entweder muss ein spezifischer Code oder gene-studied angegeben werden (Either a specific code or gene-studied must be provided) |
code.coding.where(system != 'http://snomed.info/sct' or code != '51864006').exists() or component.where(code.coding.where(system = 'http://loinc.org' and code = '48018-6').exists()).exists()
|
| obs-3 | error | Observation.referenceRange | Must have at least a low or a high or text |
low.exists() or high.exists() or text.exists()
|
| obs-6 | error | Observation | dataAbsentReason SHALL only be present if Observation.value[x] is not present |
dataAbsentReason.empty() or value.empty()
|
| obs-7 | error | Observation | If Observation.code is the same as an Observation.component.code then the value element associated with the code SHALL NOT be present |
value.empty() or component.code.where(coding.intersect(%resource.code.coding).exists()).empty()
|
Diese Struktur ist abgeleitet von MII_PR_MTB_Molekularer_Biomarker
Summary
Mandatory: 3 elements
Must-Support: 9 elements
Structures
This structure refers to these other structures:
Slices
This structure defines the following Slices:
Schlüsselelemente-Ansicht
| Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
|---|---|---|---|---|
![]() |
C | 0..* | MII_PR_MTB_Molekularer_Biomarker | Measurements and simple assertions Constraints: obs-6, obs-7, mii-mtb-ish-1 |
![]() ![]() |
SΣ | 0..1 | Meta | Metadata about the resource |
![]() ![]() ![]() |
SΣ | 0..* | canonical(StructureDefinition) | Profiles this resource claims to conform to |
![]() ![]() |
?!Σ | 0..1 | uri | A set of rules under which this content was created |
![]() ![]() |
?! | 0..* | Extension | Extensions that cannot be ignored |
![]() ![]() |
SΣ | 0..1 | Identifier | Identifier zur Abgrenzung anderer gleichartiger Untersuchungen |
![]() ![]() |
?!Σ | 1..1 | code | registered | preliminary | final | amended + Binding: ObservationStatus (required): Codes providing the status of an observation. |
![]() ![]() |
S | 2..* | CodeableConcept | Kategorie Slice: Unordered, Open by value:coding Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. |
![]() ![]() ![]() |
1..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |
![]() ![]() ![]() ![]() |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/observation-category | |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: laboratory | |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() |
1..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |
![]() ![]() ![]() ![]() |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: biomarker-category | |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() |
0..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |
![]() ![]() ![]() ![]() |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/v2-0074 | |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: GE | |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() |
SΣ | 1..1 | CodeableConcept | Code für In Situ Hybridization Untersuchung Binding: MII VS Molekulare Biomarker (extensible) |
![]() ![]() ![]() |
SΣ | 1..* | Coding | Code defined by a terminology system Slice: Unordered, Open by pattern:$this |
![]() ![]() ![]() ![]() |
SΣ | 1..1 | Coding | Generischer ISH Code Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://snomed.info/sct | |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: 51864006 | |
![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Nucleic acid hybridization, function (observable entity) | |
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() |
SΣ | 0..1 | Reference(Patient | Group) | Patient |
![]() ![]() |
SΣ | 0..* | Reference(MII PR Onkologie Diagnose Primärtumor) | What the observation is about, when it is not about the subject of record |
![]() ![]() |
SΣ | 0..1 | Reference(Encounter) | Kontakt |
![]() ![]() |
SΣ | 0..1 | Zeitpunkt der Beobachtung | |
![]() ![]() ![]() |
dateTime | |||
![]() ![]() ![]() |
Period | |||
![]() ![]() ![]() |
Timing | |||
![]() ![]() ![]() |
instant | |||
![]() ![]() |
SΣ | 0..1 | instant | Freigabedatum |
![]() ![]() |
SΣC | 0..1 | Actual result Slice: Unordered, Open by type:$this | |
![]() ![]() ![]() |
Quantity | |||
![]() ![]() ![]() |
CodeableConcept | |||
![]() ![]() ![]() |
string | |||
![]() ![]() ![]() |
boolean | |||
![]() ![]() ![]() |
integer | |||
![]() ![]() ![]() |
Range | |||
![]() ![]() ![]() |
Ratio | |||
![]() ![]() ![]() |
SampledData | |||
![]() ![]() ![]() |
time | |||
![]() ![]() ![]() |
dateTime | |||
![]() ![]() ![]() |
Period | |||
![]() ![]() ![]() |
SΣC | 0..1 | Quantity | Quantitatives Ergebnis (z.B. Signalanzahl) |
![]() ![]() ![]() |
SΣC | 0..1 | Ratio | Ratio-Ergebnis (z.B. HER2/CEP17) |
![]() ![]() ![]() |
SΣC | 0..1 | CodeableConcept | Kategorisches Ergebnis (z.B. positiv/negativ) |
![]() ![]() |
S | 0..* | CodeableConcept | Interpretation Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. |
![]() ![]() |
S | 1..1 | CodeableConcept | FISH | CISH | SISH Binding: MII VS MTB ISH Method (extensible) |
![]() ![]() |
SΣ | 0..* | Reference(DocumentReference | ImagingStudy | Media | QuestionnaireResponse | Observation | MolecularSequence) | Abgeleitet von Slice: Unordered, Open by profile:resolve() |
![]() ![]() ![]() |
Σ | 0..* | Reference(MII PR MolGen Variante) | Variant the biomarker is derived from |
![]() ![]() ![]() |
Σ | 0..* | Reference(Genotype) | Genotype the biomarker is derived from |
![]() ![]() ![]() |
Σ | 0..* | Reference(Haplotype) | Haplotype the biomarker is derived from |
![]() ![]() |
SΣ | 0..* | BackboneElement | Komponenten Slice: Unordered, Open by value:code |
![]() ![]() ![]() |
Content/Rules for all slices | |||
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example): Codes identifying names of simple observations. |
![]() ![]() ![]() |
SΣ | 0..* | BackboneElement | |
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | 48018-6 Binding: LOINCCodes (example): Codes identifying names of simple observations. Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://loinc.org | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: 48018-6 | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | The HGNC gene symbol is to be used as display text and the HGNC gene ID used as the code. If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used. Binding: HUGO Gene Nomenclature Committee Gene Names (HGNC) (extensible) |
![]() ![]() ![]() |
SΣ | 0..* | BackboneElement | Biomarker-Kategorie |
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example): Codes identifying names of simple observations. Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: biomarker-category | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | cell receptor | antigen | protein | immune stain Binding: Molecular Biomarker Categories (example) |
Documentation for this format | ||||
| Path | Status | Usage | ValueSet | Version | Source |
| Observation.status | Base | required | ObservationStatus | 📍4.0.1 | FHIR Std. |
| Observation.category | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:labCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:mbCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:geCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.code | Base | extensible | MII VS Molekulare Biomarker | 📦2027.0.0-ballot.1 | This IG |
| Observation.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Observation.method | Base | extensible | MII VS MTB ISH Method | 📦2027.0.0-ballot.1 | This IG |
| Observation.component.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.value[x] | Base | extensible | HUGO Gene Nomenclature Committee Gene Names (HGNC) | 📦3.0.0 | Genomics Reporting Implementation Guide v3.0 |
| Observation.component:biomarker-category.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:biomarker-category.value[x] | Base | example | Molecular Biomarker Categories | 📦3.0.0 | Genomics Reporting Implementation Guide v3.0 |
| Id | Grade | Path(s) | Description | Expression |
| dom-2 | error | Observation | If the resource is contained in another resource, it SHALL NOT contain nested Resources |
contained.contained.empty()
|
| dom-3 | error | Observation | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource |
contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
|
| dom-4 | error | Observation | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated |
contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
|
| dom-5 | error | Observation | If a resource is contained in another resource, it SHALL NOT have a security label |
contained.meta.security.empty()
|
| dom-6 | best practice | Observation | A resource should have narrative for robust management |
text.`div`.exists()
|
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children |
hasValue() or (children().count() > id.count())
|
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both |
extension.exists() != value.exists()
|
| mii-mtb-ish-1 | error | Observation | Entweder muss ein spezifischer Code oder gene-studied angegeben werden (Either a specific code or gene-studied must be provided) |
code.coding.where(system != 'http://snomed.info/sct' or code != '51864006').exists() or component.where(code.coding.where(system = 'http://loinc.org' and code = '48018-6').exists()).exists()
|
| obs-6 | error | Observation | dataAbsentReason SHALL only be present if Observation.value[x] is not present |
dataAbsentReason.empty() or value.empty()
|
| obs-7 | error | Observation | If Observation.code is the same as an Observation.component.code then the value element associated with the code SHALL NOT be present |
value.empty() or component.code.where(coding.intersect(%resource.code.coding).exists()).empty()
|
Differential-Ansicht
Diese Struktur ist abgeleitet von MII_PR_MTB_Molekularer_Biomarker
| Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
|---|---|---|---|---|
![]() |
C | 0..* | MII_PR_MTB_Molekularer_Biomarker | Measurements and simple assertions Constraints: mii-mtb-ish-1 |
![]() ![]() |
S | 0..1 | Identifier | Identifier zur Abgrenzung anderer gleichartiger Untersuchungen |
![]() ![]() |
1..1 | CodeableConcept | Code für In Situ Hybridization Untersuchung | |
![]() ![]() ![]() |
S | 1..* | Coding | Code defined by a terminology system Slice: Unordered, Open by pattern:$this |
![]() ![]() ![]() ![]() |
S | 1..1 | Coding | Generischer ISH Code Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://snomed.info/sct | |
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: 51864006 | |
![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Nucleic acid hybridization, function (observable entity) | |
![]() ![]() |
0..* | Reference(MII PR Onkologie Diagnose Primärtumor) | What the observation is about, when it is not about the subject of record | |
![]() ![]() |
S | 0..1 | Quantity, CodeableConcept, string, boolean, integer, Range, Ratio, SampledData, time, dateTime, Period | Actual result Slice: Unordered, Open by type:$this |
![]() ![]() ![]() |
S | 0..1 | Quantity | Quantitatives Ergebnis (z.B. Signalanzahl) |
![]() ![]() ![]() |
S | 0..1 | Ratio | Ratio-Ergebnis (z.B. HER2/CEP17) |
![]() ![]() ![]() |
S | 0..1 | CodeableConcept | Kategorisches Ergebnis (z.B. positiv/negativ) |
![]() ![]() |
S | 0..* | CodeableConcept | Interpretation |
![]() ![]() |
S | 1..1 | CodeableConcept | FISH | CISH | SISH Binding: MII VS MTB ISH Method (extensible) |
![]() ![]() |
Content/Rules for all slices | |||
![]() ![]() ![]() |
0..* | BackboneElement | ||
Documentation for this format | ||||
| Path | Status | Usage | ValueSet | Version | Source |
| Observation.method | Base | extensible | MII VS MTB ISH Method | 📦2027.0.0-ballot.1 | This IG |
| Id | Grade | Path(s) | Description | Expression |
| mii-mtb-ish-1 | error | Observation | Entweder muss ein spezifischer Code oder gene-studied angegeben werden (Either a specific code or gene-studied must be provided) |
code.coding.where(system != 'http://snomed.info/sct' or code != '51864006').exists() or component.where(code.coding.where(system = 'http://loinc.org' and code = '48018-6').exists()).exists()
|
Snapshot-AnsichtView
| Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() | ||||
|---|---|---|---|---|---|---|---|---|
![]() |
C | 0..* | MII_PR_MTB_Molekularer_Biomarker | Measurements and simple assertions Constraints: obs-6, obs-7, mii-mtb-ish-1 | ||||
![]() ![]() |
Σ | 0..1 | id | Logical id of this artifact | ||||
![]() ![]() |
SΣ | 0..1 | Meta | Metadata about the resource | ||||
![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() |
Σ | 0..1 | id | Version specific identifier | ||||
![]() ![]() ![]() |
Σ | 0..1 | instant | When the resource version last changed | ||||
![]() ![]() ![]() |
Σ | 0..1 | uri | Identifies where the resource comes from | ||||
![]() ![]() ![]() |
SΣ | 0..* | canonical(StructureDefinition) | Profiles this resource claims to conform to | ||||
![]() ![]() ![]() |
Σ | 0..* | Coding | Security Labels applied to this resource Binding: All Security Labels (extensible): Security Labels from the Healthcare Privacy and Security Classification System. | ||||
![]() ![]() ![]() |
Σ | 0..* | Coding | Tags applied to this resource Binding: CommonTags (example): Codes that represent various types of tags, commonly workflow-related; e.g. "Needs review by Dr. Jones". | ||||
![]() ![]() |
?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
![]() ![]() |
0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
| |||||
![]() ![]() |
0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements | |||||
![]() ![]() |
0..* | Resource | Contained, inline Resources | |||||
![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() |
?! | 0..* | Extension | Extensions that cannot be ignored | ||||
![]() ![]() |
SΣ | 0..1 | Identifier | Identifier zur Abgrenzung anderer gleichartiger Untersuchungen | ||||
![]() ![]() |
Σ | 0..* | Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest) | Fulfills plan, proposal or order | ||||
![]() ![]() |
Σ | 0..* | Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy) | Part of referenced event | ||||
![]() ![]() |
?!Σ | 1..1 | code | registered | preliminary | final | amended + Binding: ObservationStatus (required): Codes providing the status of an observation. | ||||
![]() ![]() |
S | 2..* | CodeableConcept | Kategorie Slice: Unordered, Open by value:coding Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | ||||
![]() ![]() ![]() |
1..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |||||
![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/observation-category | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: laboratory | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | string | Plain text representation of the concept | ||||
![]() ![]() ![]() |
1..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |||||
![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: biomarker-category | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | string | Plain text representation of the concept | ||||
![]() ![]() ![]() |
0..1 | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories. | |||||
![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() ![]() |
Σ | 1..1 | Coding | Code defined by a terminology system Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/v2-0074 | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: GE | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Representation defined by the system | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | string | Plain text representation of the concept | ||||
![]() ![]() |
SΣ | 1..1 | CodeableConcept | Code für In Situ Hybridization Untersuchung Binding: MII VS Molekulare Biomarker (extensible) | ||||
![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() |
SΣ | 1..* | Coding | Code defined by a terminology system Slice: Unordered, Open by pattern:$this | ||||
![]() ![]() ![]() ![]() |
SΣ | 1..1 | Coding | Generischer ISH Code Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://snomed.info/sct | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: 51864006 | |||||
![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Nucleic acid hybridization, function (observable entity) | |||||
![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() |
Σ | 0..1 | string | Plain text representation of the concept | ||||
![]() ![]() |
SΣ | 0..1 | Reference(Patient | Group) | Patient | ||||
![]() ![]() |
SΣ | 0..* | Reference(MII PR Onkologie Diagnose Primärtumor) | What the observation is about, when it is not about the subject of record | ||||
![]() ![]() |
SΣ | 0..1 | Reference(Encounter) | Kontakt | ||||
![]() ![]() |
SΣ | 0..1 | Zeitpunkt der Beobachtung | |||||
![]() ![]() ![]() |
dateTime | |||||||
![]() ![]() ![]() |
Period | |||||||
![]() ![]() ![]() |
Timing | |||||||
![]() ![]() ![]() |
instant | |||||||
![]() ![]() |
SΣ | 0..1 | instant | Freigabedatum | ||||
![]() ![]() |
Σ | 0..* | Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson) | Who is responsible for the observation | ||||
![]() ![]() |
SΣC | 0..1 | Actual result Slice: Unordered, Open by type:$this | |||||
![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() |
CodeableConcept | |||||||
![]() ![]() ![]() |
string | |||||||
![]() ![]() ![]() |
boolean | |||||||
![]() ![]() ![]() |
integer | |||||||
![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() |
Ratio | |||||||
![]() ![]() ![]() |
SampledData | |||||||
![]() ![]() ![]() |
time | |||||||
![]() ![]() ![]() |
dateTime | |||||||
![]() ![]() ![]() |
Period | |||||||
![]() ![]() ![]() |
SΣC | 0..1 | Quantity | Quantitatives Ergebnis (z.B. Signalanzahl) | ||||
![]() ![]() ![]() |
SΣC | 0..1 | Ratio | Ratio-Ergebnis (z.B. HER2/CEP17) | ||||
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SΣC | 0..1 | CodeableConcept | Kategorisches Ergebnis (z.B. positiv/negativ) | ||||
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C | 0..1 | CodeableConcept | Why the result is missing Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing. | ||||
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S | 0..* | CodeableConcept | Interpretation Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. | ||||
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0..* | Annotation | Comments about the observation | |||||
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0..1 | CodeableConcept | Observed body part Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality. | |||||
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S | 1..1 | CodeableConcept | FISH | CISH | SISH Binding: MII VS MTB ISH Method (extensible) | ||||
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0..1 | Reference(Specimen) | Specimen used for this observation | |||||
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0..1 | Reference(Device | DeviceMetric) | (Measurement) Device | |||||
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C | 0..* | BackboneElement | Provides guide for interpretation Constraints: obs-3 | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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C | 0..1 | SimpleQuantity | Low Range, if relevant | ||||
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C | 0..1 | SimpleQuantity | High Range, if relevant | ||||
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0..1 | CodeableConcept | Reference range qualifier Binding: ObservationReferenceRangeMeaningCodes (preferred): Code for the meaning of a reference range. | |||||
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0..* | CodeableConcept | Reference range population Binding: ObservationReferenceRangeAppliesToCodes (example): Codes identifying the population the reference range applies to. | |||||
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0..1 | Range | Applicable age range, if relevant | |||||
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0..1 | string | Text based reference range in an observation | |||||
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Σ | 0..* | Reference(Observation | QuestionnaireResponse | MolecularSequence) | Related resource that belongs to the Observation group | ||||
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SΣ | 0..* | Reference(DocumentReference | ImagingStudy | Media | QuestionnaireResponse | Observation | MolecularSequence) | Abgeleitet von Slice: Unordered, Open by profile:resolve() | ||||
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Σ | 0..* | Reference(MII PR MolGen Variante) | Variant the biomarker is derived from | ||||
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Σ | 0..* | Reference(Genotype) | Genotype the biomarker is derived from | ||||
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Σ | 0..* | Reference(Haplotype) | Haplotype the biomarker is derived from | ||||
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SΣ | 0..* | BackboneElement | Komponenten Slice: Unordered, Open by value:code | ||||
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Content/Rules for all slices | |||||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example): Codes identifying names of simple observations. | ||||
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Σ | 0..1 | Actual component result | |||||
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Quantity | |||||||
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CodeableConcept | |||||||
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string | |||||||
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boolean | |||||||
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integer | |||||||
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Range | |||||||
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Ratio | |||||||
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SampledData | |||||||
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time | |||||||
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dateTime | |||||||
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Period | |||||||
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C | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing. | ||||
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0..* | CodeableConcept | High, low, normal, etc. Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. | |||||
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0..* | See referenceRange (Observation) | Provides guide for interpretation of component result | |||||
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SΣ | 0..* | BackboneElement | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | CodeableConcept | 48018-6 Binding: LOINCCodes (example): Codes identifying names of simple observations. Required Pattern: At least the following | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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1..1 | uri | Identity of the terminology system Fixed Value: http://loinc.org | |||||
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0..1 | string | Version of the system - if relevant | |||||
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1..1 | code | Symbol in syntax defined by the system Fixed Value: 48018-6 | |||||
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0..1 | string | Representation defined by the system | |||||
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0..1 | boolean | If this coding was chosen directly by the user | |||||
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0..1 | string | Plain text representation of the concept | |||||
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Σ | 1..1 | CodeableConcept | The HGNC gene symbol is to be used as display text and the HGNC gene ID used as the code. If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used. Binding: HUGO Gene Nomenclature Committee Gene Names (HGNC) (extensible) | ||||
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C | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing. | ||||
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0..* | CodeableConcept | High, low, normal, etc. Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. | |||||
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0..* | See referenceRange (Observation) | Provides guide for interpretation of component result | |||||
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SΣ | 0..* | BackboneElement | Biomarker-Kategorie | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example): Codes identifying names of simple observations. Required Pattern: At least the following | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs | |||||
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0..1 | string | Version of the system - if relevant | |||||
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1..1 | code | Symbol in syntax defined by the system Fixed Value: biomarker-category | |||||
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0..1 | string | Representation defined by the system | |||||
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0..1 | boolean | If this coding was chosen directly by the user | |||||
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0..1 | string | Plain text representation of the concept | |||||
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Σ | 1..1 | CodeableConcept | cell receptor | antigen | protein | immune stain Binding: Molecular Biomarker Categories (example) | ||||
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C | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing. | ||||
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0..* | CodeableConcept | High, low, normal, etc. Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations. | |||||
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0..* | See referenceRange (Observation) | Provides guide for interpretation of component result | |||||
Documentation for this format | ||||||||
| Path | Status | Usage | ValueSet | Version | Source |
| Observation.meta.security | Base | extensible | SecurityLabels | 📍4.0.1 | FHIR Std. |
| Observation.meta.tag | Base | example | Common Tags | 📍4.0.1 | FHIR Std. |
| Observation.language | Base | preferred | Common Languages | 📦4.0.1 | FHIR Std. |
| Observation.status | Base | required | ObservationStatus | 📍4.0.1 | FHIR Std. |
| Observation.category | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:labCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:mbCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.category:geCategory | Base | preferred | Observation Category Codes | 📦4.0.1 | FHIR Std. |
| Observation.code | Base | extensible | MII VS Molekulare Biomarker | 📦2027.0.0-ballot.1 | This IG |
| Observation.dataAbsentReason | Base | extensible | DataAbsentReason | 📦4.0.1 | FHIR Std. |
| Observation.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Observation.bodySite | Base | example | SNOMED CT Body Structures | 📦4.0.1 | FHIR Std. |
| Observation.method | Base | extensible | MII VS MTB ISH Method | 📦2027.0.0-ballot.1 | This IG |
| Observation.referenceRange.type | Base | preferred | Observation Reference Range Meaning Codes | 📦4.0.1 | FHIR Std. |
| Observation.referenceRange.appliesTo | Base | example | Observation Reference Range Applies To Codes | 📦4.0.1 | FHIR Std. |
| Observation.component.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component.dataAbsentReason | Base | extensible | DataAbsentReason | 📦4.0.1 | FHIR Std. |
| Observation.component.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.value[x] | Base | extensible | HUGO Gene Nomenclature Committee Gene Names (HGNC) | 📦3.0.0 | Genomics Reporting Implementation Guide v3.0 |
| Observation.component:gene-studied.dataAbsentReason | Base | extensible | DataAbsentReason | 📦4.0.1 | FHIR Std. |
| Observation.component:gene-studied.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:biomarker-category.code | Base | example | LOINC Codes | 📦4.0.1 | FHIR Std. |
| Observation.component:biomarker-category.value[x] | Base | example | Molecular Biomarker Categories | 📦3.0.0 | Genomics Reporting Implementation Guide v3.0 |
| Observation.component:biomarker-category.dataAbsentReason | Base | extensible | DataAbsentReason | 📦4.0.1 | FHIR Std. |
| Observation.component:biomarker-category.interpretation | Base | extensible | Observation Interpretation Codes | 📦4.0.1 | FHIR Std. |
| Id | Grade | Path(s) | Description | Expression |
| dom-2 | error | Observation | If the resource is contained in another resource, it SHALL NOT contain nested Resources |
contained.contained.empty()
|
| dom-3 | error | Observation | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource |
contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
|
| dom-4 | error | Observation | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated |
contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
|
| dom-5 | error | Observation | If a resource is contained in another resource, it SHALL NOT have a security label |
contained.meta.security.empty()
|
| dom-6 | best practice | Observation | A resource should have narrative for robust management |
text.`div`.exists()
|
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children |
hasValue() or (children().count() > id.count())
|
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both |
extension.exists() != value.exists()
|
| mii-mtb-ish-1 | error | Observation | Entweder muss ein spezifischer Code oder gene-studied angegeben werden (Either a specific code or gene-studied must be provided) |
code.coding.where(system != 'http://snomed.info/sct' or code != '51864006').exists() or component.where(code.coding.where(system = 'http://loinc.org' and code = '48018-6').exists()).exists()
|
| obs-3 | error | Observation.referenceRange | Must have at least a low or a high or text |
low.exists() or high.exists() or text.exists()
|
| obs-6 | error | Observation | dataAbsentReason SHALL only be present if Observation.value[x] is not present |
dataAbsentReason.empty() or value.empty()
|
| obs-7 | error | Observation | If Observation.code is the same as an Observation.component.code then the value element associated with the code SHALL NOT be present |
value.empty() or component.code.where(coding.intersect(%resource.code.coding).exists()).empty()
|
Diese Struktur ist abgeleitet von MII_PR_MTB_Molekularer_Biomarker
Summary
Mandatory: 3 elements
Must-Support: 9 elements
Structures
This structure refers to these other structures:
Slices
This structure defines the following Slices:
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